Detail information of Os06g0598900_circ_g.2


General Information
CircRNA Name Os06g0598900_circ_g.2
ID in PlantcircBase osa_circ_031298
Alias NA
Organism Oryza sativa
Position chr6: 23614673-23617318  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0598900
Parent gene annotation Similar to Serine-threonine kinase receptor-associated protein (
UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activ
ator with WD repeats). (Os06t0598900-01);Hypothetical gene. (Os0
6t0598900-02)
Parent gene strand -
Alternative splicing Os06g0598900_circ_g.1 Os06g0598900_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0598900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTTGTGTCTAGGCAGCAGCTCCAGACAGCCCCTTTATGACCTTGGAAAGTCCCAATCCAAT
CTCCAGTCTCACCATTACGAAGCATTGGATTCCCATttatttcttcaccagtgaagaaatcaaa
tacatgaacccacatatcttctcccccaacaataaatttgctcccagattttggttccagggaa
gctgactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 672
Transcript exons: 23614673-23614812,23614909-23615046,23615153-23615328,23
615723-23615804,23617183-23617318
TTATTTCTTCACCAGTGAAGAAATCAAATACATGAACCCACATATCTTCTCCCCCAACAATAAA
TTTGCTCCCAGATTTTGGTTCCAGGGAAGCTGACTCCACAGTGCAAGGCATATCATAGCTTTTA
ACAAGCCCAAAGTGATTAGCATCCCAAAATTTAACACTCGAGCCATCAGCTGTAGTGATGAACC
TGCTGTCTTGACTTACTTCTGCGCTAGTCACAGGCGCCTTGGTTTCAAGAGTTTGGACAATTTT
TCCAGTCCTCACATCCCACAATCTTACTCCTCCCATATCAGAGCACGAGCTTAGTATTGTTTGA
TCACTATGAAGCCAAGCAACAGTTCGCACGTTACCAGGTGCTTTGTCAAGTTCTCTTGGTGCTG
CATCTGGACGATTCATATCATAGACACGCAAAATCTTTTCTACGCCTCCAGTGAGCAACAGGTG
GGTATCCTCAGAAAACGCGCATGCACGGACAATGTGCTTGTGTTCAAATGAATGTAGCTCATCA
CCTGTTAGTGCATCCCAAACTTTGGCTGAAAAGTCAGCAGAACCAGATGCAGCACGCAGAGCAT
TTGTGTCTAGGCAGCAGCTCCAGACAGCCCCTTTATGACCTTGGAAAGTCCCAATCCAATCTCC
AGTCTCACCATTACGAAGCATTGGATTCCCAT

Genomic sequence TTATTTCTTCACCAGTGAAGAAATCAAATACATGAACCCACATATCTTCTCCCCCAACAATAAA
TTTGCTCCCAGATTTTGGTTCCAGGGAAGCTGACTCCACAGTGCAAGGCATATCATAGCTTTTA
ACAAGCCCAAAGCTGCAAAATAACCAGCAAAAAATGTTTGTTGCAAAGGATTTAATAATTTTGT
ATGACACAGAACAACGGTATAATGATGATAGAAATAATACGTACTGATTAGCATCCCAAAATTT
AACACTCGAGCCATCAGCTGTAGTGATGAACCTGCTGTCTTGACTTACTTCTGCGCTAGTCACA
GGCGCCTTGGTTTCAAGAGTTTGGACAATTTTTCCAGTCCTCACATCCCACAATCTGTGCAGTG
CCATAACAATTAAATAAGAGGAACAAAATTACAATAAACTAGGAACAAATGGTAGCAGCTCTTC
CTATAGAATGAAGATATTTTTTCCAGACACACCTTACTCCTCCCATATCAGAGCACGAGCTTAG
TATTGTTTGATCACTATGAAGCCAAGCAACAGTTCGCACGTTACCAGGTGCTTTGTCAAGTTCT
CTTGGTGCTGCATCTGGACGATTCATATCATAGACACGCAAAATCTTTTCTACGCCTCCAGTGA
GCAACAGGTGGGTATCCTACAGCGCCAATGGCCATTTAATTAGATTTCAAACTGCTCACAAAGG
ACAGCATTATTTTGAAATTAAATGCTGCAACATACTGCAGATAAGGTAGCAAGAAGCTATAACA
GTTACATGGATATACTGATATACACTTAGTTAATTGTAAGTGATTAAATACTTGGTTCATAGCA
AGTGATTAAATACTGATATCAGAAGGTTGGTATATACATTTTCATTAAGACAGTCCATGATCTG
TGCACAGGCATAAGGCCACCAGACCTTAGTTTAACAGTCCAGAGTGTCTGGAAAAATATTCAAA
GAAAAGAAGGACAGCATACACTTTCTATAGGGTAGAAAGAGAAAATCCACAAAGCTAGCACTGA
TGATTAAAACATTCTGGAAGCATTACCTCAGAAAACGCGCATGCACGGACAATGTGCTTGTGTT
CAAATGAATGTAGCTCATCACCTGTTAGTGCATCCCAAACTTTGCTGGAAAAAAATCAACATAC
ATCTATTATAAGAGCAAAATAAACTTGTAATGGACATAACTCGTAAGTACTAACTCAAGGACTA
GAATATTAGTTGAGCAGCAACAATCTGTTATTTATTTGTGTTGCAAGGCCTCAAAACCAACATA
TATTATGCTGTAGATCACAACTTAGAATTCTAAATGTTGCAACTTAGAATTGCAAAACAGCATC
CTACTGTAGATCACATTCACGAGATGACTTATGGGTGTACCTTACGTTCAATCATTCATAACTA
ATTTATGCACAACCACCAACTTCAGGATACACCATAAATTCTCCATAATTCCAAACTCCTCAAC
ATACTAATCTGTAAGCCATGTGCTAAAATTACAAAATTGTTTTACTATGCAAATCTTCATGCCA
AAATTGAGCTTCAAGCATCCTCTACTCTTTTAGGCACAAATTAATGGCATATTGTTTTATATTA
CTCCCTCTATCCAAAAGTCTAAGGCATATTTTTTTTGTCACCAAGACCAAGGAGGAATTAACTC
ATCCACCCCATGTGACAAAACCAAGGAACTAGATGAATGCATGCAACCAATGAGTATTAAGATG
GCTGCTTGGGTTCAGGTCAACAATTTAATTTAGTACATAGAGACTACAAATATGCCCAACTCAT
TTGGAAAAACCAGAAAATAAAATAATGTCTTAGACTTTTGGAGGGAGTATATGAGATGCAGATT
TCCTTTGGTTCCACATAACCTTTATGTTGAGTAATCAATCCATTATGTTTTGGTATTTCATGAA
TGTAATCAAGAGCAGAGAACACAAAATAAGCAAGTCTAAAGCACTTTGGAGAACTCTCAGTGCT
GATATTTATATTCATTTTGAAACATACTTAAGATCCAATTCTCCATGCTGCAAAAAAGAATCAA
AATGGTACGCAGAAACACAAGATTTGGAAGAAAGCAGAAATAACAAATTCAGTTTTTATCCTCA
GTAATTTCTGCAAGGCGAACAGTGCTATGCTAAAGCTAAACTATGCTTATATGTTTATTACGAG
TTTAAGAATATGTGTTATTAATGACTAGATCCATAACAATCATTTTTCTTCTCATCTAGAGAAA
ATTAAGTAAAAATCAAGCTTTGAACAAATATTACATCATCTGAAGTTTTTGATGGATTCTTTTC
CAAAGGCAAAAAAGAAATACACTAGATACCATGAACATTCAGAACTGAACTATAATATATTATA
ATTACACCTGCAAGTAGCACGTCTGGATGAAAAAAAATTGTAATAAAAATATAAATACACTGAA
TGCATGCACATTCCATTTTTGTCAAAGATAAATAATTAAAATAGACACCACTGAAATTTCATAG
GGTGAATGTCATACGCTGAAAAGTCAGCAGAACCAGATGCAGCACGCAGAGCATTTGTGTCTAG
GCAGCAGCTCCAGACAGCCCCTTTATGACCTTGGAAAGTCCCAATCCAATCTCCAGTCTCACCA
TTACGAAGCATTGGATTCCCAT
Conservation Information
Conserved circRNAs osi_circ_016389
PMCS 0.255856118
Functional Information
Coding potential Y
Potential coding position 23615738-23614687(+)
23617258-23614766(+)
23617309-23614675(-)
Potential amino acid sequence MHGQCACVQMNVAHHLLVHPKLWLKSQQNQMQHAEHLCLGSSSRQPLYDLGKSQSNLQSHHYEA
LDSHLFLHQ*(+)
MTLESPNPISSLTITKHWIPIYFFTSEEIKYMNPHIFSPNNKFAPRFWFQGS*(+)
MLRNGETGDWIGTFQGHKGAVWSCCLDTNALRAASGSADFSAKVWDALTGDELHSFEHKHIVRA
CAFSEDTHLLLTGGVEKILRVYDMNRPDAAPRELDKAPGNVRTVAWLHSDQTILSSCSDMGGVR
LWDVRTGKIVQTLETKAPVTSAEVSQDSRFITTADGSSVKFWDANHFGLVKSYDMPCTVESASL
EPKSGSKFIVGGEDMWVHVFDFFTGEEINGNPMLRNGETGDWIGTFQGHKGAVWSCCLDTNALR
AASGSADFSAKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRVYDMNRPDAAPR
ELDKAPGNVRTVAWLHSDQTILSSCSDMGGVRLWDVRTGKIVQTLETKAPVTSAEVSQDSRFIT
TADGSSVKFWDANHFGLVKSYDMPCTVESASLEPKSGSKFIVGGEDMWVHVFDFFTGEEINGNP
MLRNGETGDWIGTFQGHKGAVWSCCLDTNALRAASGSADFSAKVWDALTGDELHSFEHKHIVRA
CAFSEDTHLLLTGGVEKILRVYDMNRPDAAPRELDKAPGNVRTVAWLHSDQTILSSCSDMGGVR
LWDVRTGKIVQTLETKAPVTSAEVSQDSRFITTADGSSVKFWDANHFGLVKSYDMPCTVESASL
EPKSGSKFIVGGEDMWVHVFDFFTGEEINGNPMLRNGETGDWIGTFQGHKGAVWSCCLDTNALR
AASGSADFSAKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRVYDMNRPDAAPR
ELDKAPGNVRTVAWLHSDQTILSSCSDMGGVRLWDVRTGKIVQTLETKAPVTSAEVSQDSRFIT
TADGSSVKFWDANHFGLVKSYDMPCTVESASLEPKSGSKFIVGGEDMWVHVFDFFTGEEI(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017