Detail information of Os03g0158700_circ_g.1


General Information
CircRNA Name Os03g0158700_circ_g.1
ID in PlantcircBase osa_circ_018038
Alias NA
Organism Oryza sativa
Position chr3: 3153342-3153705  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os03g0158700
Parent gene annotation Similar to PA domain containing protein, expressed. (Os03t015870
0-01);Similar to P69C protein. (Os03t0158700-02)
Parent gene strand -
Alternative splicing Os03g0158700_circ_g.2
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   AC-GT
Number of exons covered Os03t0158700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCGCGACGCCGCTGGACGCCGTCGTGGTGGAGAAGCACAGAACGATCCTGCCGGACGCCGCCG
CCCGGCTCCCGTTGGTTAGCTGGTCGAATGAGCAAGaccttaaggatgtgaggggagatggagc
tggggcccctggaggagaagtaggcgacggccggcgccggcgacttgccgacgagcgtcgtgct
cggggaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACCTTAAGGATGTGAGGGGAGATGGAGCTGGGGCCCCTGGAGGAGAAGTAGGCGACGGCCGGCG
CCGGCGACTTGCCGACGAGCGTCGTGCTCGGGGAGAAGCGCGCGGTCGGCGGGCGGCTGCTGCC
GCGGATGTAGTCGAGGATCCGGGTGCCCTGGCGGAGGTCGACGTGGACGGTGGGGAGGAAGTTG
TCCTGCGTCGACCTGCGGGAGATGGTCTCGGCGAAGATCAGGCCGGCGCCGCCGGCGGCGTACA
CCGCCAGCGCCGCGACGCCGCTGGACGCCGTCGTGGTGGAGAAGCACAGAACGATCCTGCCGGA
CGCCGCCGCCCGGCTCCCGTTGGTTAGCTGGTCGAATGAGCAAG
Conservation Information
Conserved circRNAs osi_circ_013701
PMCS 0.169422665
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017