Detail information of Os10g0462900_circ_g.18


General Information
CircRNA Name Os10g0462900_circ_g.18
ID in PlantcircBase osa_circ_007037
Alias Os_ciR6775
Organism Oryza sativa
Position chr10: 17052147-17052839  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0462900
Parent gene annotation Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila
r to mitochondrial chaperonin-60. (Os10t0462900-02)
Parent gene strand +
Alternative splicing Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.9 Os10g0462900_circ_g.10 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.19
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0462900-02:4
Os10t0462900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGCGATATACCTTATGTAGGTGAATATGTGGACATGGTGAAGGCTGGTATCATTGACCCACT
AAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAGatcggaggagccagtgaagctgaagttg
gtgagaagaaggatagagtgacagatgcattgaatgccactaaagctgctgtggaagagggtat
tgtaccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATG
CCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGGTATGCAGTTGCTCCACTTCAGTAGATT
TCTTTCAATATGTTTTCCTTGTAATGTACTTGTTCAGTTTGCATCTTTGCATTATTATGCCCAA
GTATGCTGACATGACATCTTTGCATTACAATACAGGTGGAGGTGTTGCACTTCTTTATGCATCA
AAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGA
ATGCTTTGAAGGTTTGGGAGGGATAATAACTTCTCATTTCCTGTTTTGCTGATTTCTTCTCTGG
GAGCAAAACCTGATGACAACTTATTTTGCAGACACCGGTGCACACTATTGCTTCCAACGCAGGT
GTAGAAGGGGCTGTTGTTGTCGGTAAGCTTTTGGAACAAGATAACACCGACCTTGGCTATGATG
CGGCTAAAGGTATGATTGAACCTTTCCTCATTGAATATCGTAATATCCCATGATTGTCGTCTGT
AGTTTGTTGCTGATCCGTGTGCGATATACCTTATGTAGGTGAATATGTGGACATGGTGAAGGCT
GGTATCATTGACCCACTAAAAGTGATCAGAACTGCCTTGGTGGATGCTGCAAG
Conservation Information
Conserved circRNAs osi_circ_008487
PMCS 0.203959091
Functional Information
Coding potential Y
Potential coding position 17052776-17052192(+)
17052206-17052804(-)
Potential amino acid sequence MVKAGIIDPLKVIRTALVDAARSEEPVKLKLVRRRIE*(+)
MHLSLYPSSHQLQLHWLLRSCSIHQGSSDHF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017