Detail information of 5_circ_ag.13


General Information
CircRNA Name 5_circ_ag.13
ID in PlantcircBase ath_circ_039892
Alias NA
Organism Arabidpsis thaliana
Position chr5: 7609577-7614434  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, circRNA_finder, find_circ, CIRI-full
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_igg.12 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 AT5G22796_circ_g.1 AT5G22796_circ_g.2
Support reads 10
Tissues root, aerial, inflorescences
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACTTTTATGCAGGAGCCGATTTCAT
AGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTGatagttctaggactattcaaagtccttc
agagcaaccaatcagctaagttataaatgtcttaatttgacagaccaaatgaactaagctacac
aaagttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 222
Transcript exons: 7609577-7609751,7614388-7614434
ATAGTTCTAGGACTATTCAAAGTCCTTCAGAGCAACCAATCAGCTAAGTTATAAATGTCTTAAT
TTGACAGACCAAATGAACTAAGCTACACAAAGTTTATTTGATTATTTCTTATCATTCAATTTAT
AGAACCTATAAGCAGTGCTAGAATTTTCTGGAAGAACTTCATCTTAGGCCGATTTCATAGCCAA
CGAACCTTGTGAACTAAAAGAAGTTATGTG

Transcript length: 230
Transcript exons: 7609577-7614434
ATAGTTCTAGGACTATTCAAAGTCCTTCAGAGCAACCAATCAGCTAACTCCCTCTGACGTAAGT
AGATCACAACATTGAAAATAAACTTCATGAGTGCTCGAGTATTGATGTTCGTGGAGGCGTTGTT
TTAGAACTCTAGAGTTACCTTCTAGTTTCTTAAGTTCTCAATCATTTTCCCAGGAGCCGATTTC
ATAGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTG

Genomic sequence ATAGTTCTAGGACTATTCAAAGTCCTTCAGAGCAACCAATCAGCTAAGTTATAAATGTCTTAAT
TTGACAGACCAAATGAACTAAGCTACACAAAGTTTATTTGATTATTTCTTATCATTCAATTTAT
AGAACCTATAAGCAGTGCTAGAATTTTCTGGAAGAACTTCATCTTAGAGTTAAACAATACATTC
CGCCAACAATGAACTGTCACTTGTAAGTTGTCTAACTCTTAAGACTCAATGAACTTTTTTTTTT
TGTTCTTCTGAAAACTACAACAATCTTTTTTGAAAACAGGCAAATTTTATGTTTGTTGTTGGTG
TTGGTGGCTGAGACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGGTAAAT
AAACTCTAACTGAGACCATCCTCTCGTTTCTCTCAGTTTTTGTTATTAGATTGTAGAATTGACA
AAATTGAATCGGAATTTTGAGCAGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGC
TACAACTTTGGATGATATATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATC
TCATGGCCGGAAATTTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTGGTAAGATTAATC
TCACTAGTCTTTAGTTTTGATTAGATTTCTGAATTCTTTTGATCAATGAACTGATGAATTTGAA
TGTGACGTTACAACAGCTGAAGCCGTGTATCGGAAACACAAGTGATAGAGCCAGATGCAAACAA
GGCTTGTAAAAAGTTGGCAAACATAAATCTGATGCATCGTTTTAAGGTTGGTTGTTATATACAA
AATTTTGGCATAATCTTGGCTTGTTATGCGTTTGGATCTATCTATTTGATCAAAGTTCTGGTAT
CATATTACAGATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGA
ACCACTTGACACAAAACAAATCAGCTCTTTGAACCTCTTTCAACAAGATTTCGATGTGGAAGGA
CTTTTAATCATTTGTGAAGGCTATATCTGATGTAGATTTTGATGCCAGAAACAACAAATATTGT
GAGATCTCATGGCAATAAATTTTAAGTCACAATCGAGAAGAAACCACTAGGATCTTGGTAAGAG
TAATCTCACTAGTCTTTAGTTTTGATCAGATTTTTGAAGTCTCTTGATCAATGAACTAATGGAT
TTGAATAAATGTGGTGTTACAACAGAATTTTGGATGGGCTTATATGCAACTAAGGGACTATACA
GCAGCTAAAGACGAAGTCTTACTAAAGTTGCTACAAGGAAATGGAATAACCTTTTCAAAGCAAA
GGTTTGCTTCTAATACCTGTTTTATAAACGCAGTATTCCCAATCTTTGGTGCCTCGAAATTAAA
TTTCATATTTCTGCAACTTTACCTTCTCTCAAACATACAAATGTTGAGTTCCTGCTAGTACATT
AACTTTCTTGCGTTTCCCCAAACATACATACTAGTTGTAAGCATATATATTAAGATTCTTGTCC
CTCCTTTAGAGTCAGGTTGGCATTAGAGGTGAGGCTTCGGTTGGAGATGCTTATAACCAAATTT
GGGTTGTGAAACTTGAGGAAAAGATGAAAATCCTGAAAATACGAAAAATTTGCTTACAATGTTC
GAAGTTGGCTAGATTTCAATATTTGTGTTAACTCACATCTTCTCTTGGTTCATCTCAGATCAAG
GAACGTAAGGAGAAAATATATGTAGCTGGTTCTAACATAAGGAGATCGCAACATTCAAATGATA
TTTCATTAAAAGTACCTTTCCAATTCTGTTGACAAATGCTCTCATAGAAGTATTTGAGTGCTCA
ATCCCTGATGTTCTTGATTTATGTTTTTCATTACTAATAGGTGGAAAGTCTTTGGATGGGGACG
AGGACAATGATGGGGACTATATGAATGCGGTGTCGCATGGCCATAGCAAGGCTTCCTCGATTTT
TAAATCTAAGAAATCTAAGGCATCTCTTTGAGGTTGGTTGTTATAAAGTATACACATTTTGGCA
TAATCTTCGTTTGGATCTATCCATTCAACTTTTTGGTGACATATTACAGATCCAAGTTTATTAA
AACCAGAGTCTTCTTGAAGTGGATTACTAAGATGATTAAGCGCTGACTTAATGGATTAATACAA
AACAAGATTAGCTCTTTGAACAAGTGAGGTTTGCAATTGAGTTAGATGATGTGGAAGGACTTCT
AATCATCCGTGAAGGAAATATCTAATGCAGACTTGGATGCCAGGAACAACAAAGCCAGTCGTTT
CTCTGTAAATTAATGGAGAAGGAACATTACTGGAAATACAAGGATCGAAATCTATTATCATTCT
TCATTAACTAGATTTTAGGGCTTATATATATATATACCAAGAGTTATACTAGGTATTCTGGTTT
GTATCTAAATATTTTACTTGTTGGTTGCAGCTGTTTAGGGTTTGAGATGTTGGCGTATCTTGCA
ACCAGCTTCTTAGAATCCACCTATGGATTCTCTGGCACAAGGATAATGGCTGAATACTGCATTT
TCCCCCGAGGATATTATTTCATTTCAACTGATTTGATGTCAAAGTTACGATACCAAATCAGATA
AGTTATAATTATCTTAACTTGTCATACCATATATACAAAGCTAGACAAGAGTTTATTTGATGTA
CATTCTTTCGTATCATTCAATTTTTAGAACCTATAAGCAGTGCCAAAAGGTTTCTAGAAGAACT
TCATCTTGGTATAAAATAAGACGATCCGCCAACCACGAACTCCCACTTGTAAGTTGTCATTTTA
ATGTAATGTTATAGTTACTCAACAAATTATATAAGATATAATTTTCTTAAATTTTCGTGAATGA
ATATATAGTCAGATCAATGGAACTAAGCTTGAAGAAGGTTTATTATTTTGTACACTCCGTATCA
AACATTTTATACAAGCTAGAAGCATTGCCAGAAGATTCTAGAAGAGCTTCATCATCGAGTATTT
TAAGACGATCAGCCAGCCACGAACTTCCACCTGTAAGTTTTCATTTTATTGATCCCATGATTAT
TCATTATGCATAGGACAACTTTTTAATCGTACCAACGACTTGGTAGGTCATCTTGTATATATTT
GCACTGATGGTACATTATTTTAAGTGTATATTGTTTTGGATTTTGCAGCTTAAAGCACTGCAAT
CCGTAGCTAAGAGATGAAACATAAGAGATGTAGTTCTAGAGAAAAGCCAAAAACTGGATCAAGA
AAGAGACTTGTGGAAAAATATCAAATTTTTTGAAAAGAACTTATTGGGGTCTTTGTTTCTTGTG
TTCTTAAATCAAAAACACATTATGTCGCTTATCTCCCAGGCATCGTTTTGCTTATTTCAGGTAT
ATTGCAATGACTTCGGACATAATTAATGTATATCGTTTCTTAGGTTGACTCCTTTCCCTAGTAT
GTTACTCCAATGTTTTTCTACAATAATATAGTTTCTAGTAACTTAAATCTTTTTGATATTATAT
AGTAATATGTGATCATGTGGGTCTCAATCTATGAAAACTAATCAAATATTGATTCAGCTTTTTT
TACAGGTAAGTAAAGAGAAAAAGATACCGAGCATATGACATGCTTGTTCAGATTGGTCATGCAT
ACGCAGATGAAAAAAACTACATAGGTACTTCAATATGTTATGTTTAGTTCAATCCTAACAAGTC
ATTGTAACATTGTTCAGGTCTTTGTTTTTCTTTCGTGCGTCAAGATTAATTGTTAGCCTCTGCT
ATAATTGTAACAGGTGGTTGGTTGCCTTGATGAAATAACCTTAAGATCATTAGTGTTGTTGTTA
AGGGCGTAGCTCGTTTGGCATCTGGTCTTATAATAGTGCTTTTAATCTGCTTCCTTCAACATTG
CTTCTCCTTCAACGGAAAAACAAGGAAATTGCAAAAATTAGTGATCTTCTTCCTTTTCAAGGGT
GTTCCTGTGAGTAAGCCATTTGTCTCACTTGTTTAATAACCAGACCCGGTGAACTGTTTTCCCT
TATCTGAAAAACATGCCAATTTACGTTTGTTGAAGGTGCTGGGTGGCTAAAACTACGCGTTGCA
GAACGACACAGAAACTTAAAGAACATGGTCGAAGGTTTACTGAAGTTGCCAGAAGAAAATGAAT
TACCTTTACAAAGAAAAGGTGTGCAACTAATATCTTTGGTGCCTAGAATTTAATTTCACATTTG
CACAGCTTTTCTTTGTCTCACACATGTAGACGCAGACAATTACAAATGTTTGGCGCCTTGCTAG
TACATAAAAATTGATTGCTTAGCCGTAAATATACATACTAGGTGTTAATATCTATATTAGGATT
GTTTCTGTGGATTGTTGTTCTTTTGAAGAGTCGTTTCAGTCTTATAGGTGATGCTTTGACTGGA
GATGCTCATCAAGAAATATGACATGAAGGATTTCAAGTCTGTGAAGCCTAAGGAACATATAAAA
CTCCTAAAAACACAAAAGGTTTGTTTACGATATTCAAAGTTGTCTAGATTTCAATGTTATGCCT
TGCATATTCTCTTGGTATCAATGCACTTATGGAGAAGAATATGCAGCTCCCTCTGACGTAAGTA
GATCACAACATTGAAAATAAACTTCATGAGTGCTCGAGTATTGATGTTCGTGGAGGCGTTGTTT
TAGAACTCTAGAGTTACCTTCTAGTTTCTTAAGTTCTCAATCATTTTCCCAGGTATGTCTTTAA
TATTTTTCTACTGCGTAGTATCTCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACT
TTTATGCAGGAGCCGATTTCATAGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.418200933
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017