Detail information of Os02g0167366_circ_g.2


General Information
CircRNA Name Os02g0167366_circ_g.2
ID in PlantcircBase osa_circ_013331
Alias Os_ciR8250
Organism Oryza sativa
Position chr2: 3622102-3622266  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os02g0167300
Parent gene annotation Tubulin beta-3 chain (Beta-3 tubulin). (Os02t0167300-01);Similar
to Tubulin beta-5 chain. (Os02t0167300-02)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os02t0167366-00:1
Os02t0167300-02:1
Os02t0167300-01:1
Os02t0167366-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCGACATCCCTCCCAACGGCCTGAAGATGGCGTCCACCTTCATCGGCAACTCGACGTCGATC
CAGGAGATGTTCCGCCGCgtggacgagcagatgctcaacgtccagaacaagaactcgtcctact
tcgtggagtggatcccgaataacgtgaagtcgagcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGACGAGCAGATGCTCAACGTCCAGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCGA
ATAACGTGAAGTCGAGCGTGTGCGACATCCCTCCCAACGGCCTGAAGATGGCGTCCACCTTCAT
CGGCAACTCGACGTCGATCCAGGAGATGTTCCGCCGC
Conservation Information
Conserved circRNAs osi_circ_008959 ecr_circ_000051
PMCS 1.054844444
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015