Detail information of scaffold110.118_circ_g.1


General Information
CircRNA Name scaffold110.118_circ_g.1
ID in PlantcircBase ecr_circ_000051
Alias NA
Organism Echinochloa crus-galli
Position chrscaffold110: 1897179-1897344  JBrowse»
Reference genome Echinochloa crus-galli v2
Type   e-circRNA
Identification method circseq-cup
Parent gene scaffold110.118
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TC-TC
Number of exons covered scaffold110.118:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACACACGCTGGACTTGACGTTGTTGGGGATCCACTCCACAAAGTAGGACGAGTTCTTGTTCTG
GACGTTGATCATCTGCTCGgctcaccctcctgaacatctcctggatggaggttgagttgccaat
gaaggtggaagccatggacaggccccttggtgggatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTCACCCTCCTGAACATCTCCTGGATGGAGGTTGAGTTGCCAATGAAGGTGGAAGCCATGGAC
AGGCCCCTTGGTGGGATGTCACACACGCTGGACTTGACGTTGTTGGGGATCCACTCCACAAAGT
AGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCG
Conservation Information
Conserved circRNAs osa_circ_013331
PMCS
Functional Information
Coding potential Y
Potential coding position 1897339-1897263(-)
Potential amino acid sequence MINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSRADDQRPEQEL
VLLCGVDPQQRQVQRV*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References NA