Detail information of BGIOSGA014399_circ_g.3


General Information
CircRNA Name BGIOSGA014399_circ_g.3
ID in PlantcircBase osi_circ_014746
Alias Chr04:31339615_31340261(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29400921-29401567  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014399
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014399_circ_igg.1 BGIOSGA014399_circ_g.1 BGIOSGA014399_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014399-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCTGAACCAAATATTGAATATGTAGAAATAGAAATAACACCTGCCACCTCCTTTTGCTGAAC
GTGGACTTGTCCTGCTTCTTTAAAGCGGAATGCAGCccaggaagcttcttcctttcttacgagg
gtatgtattcgatccaaatgcatttcgtcttgcagtcaaatctgaatcatctccactaatcccc
ttctctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGAAGCTTCTTCCTTTCTTACGAGGGTATGTATTCGATCCAAATGCATTTCGTCTTGCAGT
CAAATCTGAATCATCTCCACTAATCCCCTTCTCTGTGTCTGTCTTTAGCATGCGCGCTACCCCA
GAAATCTGTGGACGAAGTCACAAGGTGTAAACTGTTTTGCACATACATGTAAGGACAATGGCAC
AAGAAATACTCACCCCTCCATACTGTTGTAGAGCAGAGTAATTGTGATCTCTGGTCAATGCAGT
AAGTTGGTCTTCTTTGATACCAAAGCCCAGTGCACCATCAACTGGCGGTGCTGCAAAGTCAATA
TTGTAGCAAACATTGAGTAACAGCGAGAACAAAACATACAACCCTTCCATGGATGTACTCTAAA
TTCTTATCGCTATCATATAGCAACTGCGCTCCAGTAAAGCATTCATAGATGTCCCACTTCTAGA
ATATATGACCATTGCAAACCACAGGCAACCATAGTGACAAGAAAATAAAGTTTAACTAGTTACA
CGAAACTCTGATATATTATCGTGCAGAACATGAAAACTCTGAACCAAATATTGAATATGTAGAA
ATAGAAATAACACCTGCCACCTCCTTTTGCTGAACGTGGACTTGTCCTGCTTCTTTAAAGCGGA
ATGCAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021