Detail information of BGIOSGA014399_circ_g.2


General Information
CircRNA Name BGIOSGA014399_circ_g.2
ID in PlantcircBase osi_circ_005702
Alias 4:29398281|29399365
Organism Oryza sativa ssp. indica
Position chr4: 29398281-29399365  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014399
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014399_circ_igg.1 BGIOSGA014399_circ_g.1 BGIOSGA014399_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014399-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTAAAAAATCAAACCTGCAAAGGTGTTTCTTCACCAGAATCTTCAGAAATGCTTGCCATTAG
CAGTCCCCATTCAGTGTTAATGCCAACTGCGGTCACctcgggctcaaatatgcttccagacgta
ttctgagcaattccttcgacaatcaatgatgagattgaagcagataacacctgaacattatctg
gaggatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGGCTCAAATATGCTTCCAGACGTATTCTGAGCAATTCCTTCGACAATCAATGATGAGATT
GAAGCAGATAACACCTGAACATTATCTGGAGGATCCATTTTCTTTCCACCAAAGTAAGCCTCCA
CAACAGTCATCTTAAAATTGACAAGAAATAGGGAATAAGTCGTGGCTGAGCAAATTTCTGGAAT
CATGGATCATCTTTGTATCCACCGAAGTGCACAACATTGAGAATATGACAACAGCACCCAACCT
GATTCAAAGTCAGCGTTCCTGTCTTGTCGCTGCAAATTGTTGTGGCTGAACCCATAGTTTCACA
TGCAGAGAGCCTCCTGACCTATAAGCATTAACCCACTCAAGAGAATGCATTTTGCAGGAATAAC
AAGCAAGCACAATACCAACAAGCGAGCATACCAGAGCTTTGTCCCTCATCATCTTGCGCATAGA
GAAGGCAAGCCTGACACAGATAAGTACAGGTATTAGGTTGCTGATAAGGGTGCAAAGTAAAATA
CATTATCAAATCACACTTACGTCAACGTGACGGCCAATGGTAACCCTTCAGGAACAGCCACGAC
AACAATTGTTACCTAGTTACATCTCAAGTTGGTAAGATAACAGAAAATGGAAACACCAAAGCAT
CAGACATGTACAATAGAGTCTACACCTACCGCCACTGTAAATATTCCTACTATTCCTCGTATTG
TCTGGCCTACACCCATTTTTCCTTTCACATATTGCACTGACCCATCAGGGTTGTAGGTATGCCC
AGTGAAGTACCTACAGGAAAACAAAGCGACACATATAAATAAATAGACATTTTGTTAAAACAAA
TATAAGCAAACTCTACCTGGCCAGAAGGACAACAAGAACGGCGAGAGCAACAGAAAGTCCAACC
ATTCCAATGAAGGTGGCAACACCGTTCAAGCGAACCTACTCCAGAACAATAAATTCATGTCAAC
TCATGAACTCGTGCAAAAGTCAACAAGTTAAAAAATCAAACCTGCAAAGGTGTTTCTTCACCAG
AATCTTCAGAAATGCTTGCCATTAGCAGTCCCCATTCAGTGTTAATGCCAACTGCGGTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 29399328-29398283(-)
29399184-29398311(+)
Potential amino acid sequence MASISEDSGEETPLQVRLNGVATFIGMVGLSVALAVLVVLLARYFTGHTYNPDGSVQYVKGKMG
VGQTIRGIVGIFTVAVTIVVVAVPEGLPLAVTLTLAFSMRKMMRDKALVRRLSACETMGSATTI
CSDKTGTLTLNQMTVVEAYFGGKKMDPPDNVQVLSASISSLIVEGIAQNTSGSIFEPEVTAVGI
NTEWGLLMASISEDSGEETPLQVRLNGVATFIGMVGLSVALAVLVVLLARYFTGHTYNPDGSVQ
YVKGKMGVGQTIRGIVGIFTVAVTIVVVAVPEGLPLAVTLTLAFSMRKMMRDKALVRRLSACET
MGSATTICSDKTGTLTLNQMTVVEAYFGGKKMDPPDNVQVLSASISSLIVEGIAQNTSGSIFEP
EVTAVGINTEWGLLMASISEDSGEETPLQVRLNGVATFIGMVGLSVALAVLVVLLARYFTGHTY
NPDGSVQYVKGKMGVGQTIRGIVGIFTVAVTIVVVAVPEGLPLAVTLTLAFSMRKMMRDKALVR
RLSACETMGSATTICSDKTGTLTLNQMTVVEAYFGGKKMDPPDNVQVLSASISSLIVEGIAQNT
SGSIFEPEVTAVGINTEWGLLMASISEDSGEETPLQVRLNGVATFIGMVGLSVALAVLVVLLAR
YFTGHTYNPDGSVQYVKGKMGVGQTIRGIVGIFTVAVTIVVVAVPEGLPLAVTLTLAFSMRKMM
RDKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYFGGKKMDPPDNVQVLSASISSLIV
EGIAQNTSGSIFEPE(-)
MKVATPFKRTCKGVSSPESSEMLAISSPHSVLMPTAVTSGSNMLPDVF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021