Detail information of BGIOSGA008107_circ_g.3


General Information
CircRNA Name BGIOSGA008107_circ_g.3
ID in PlantcircBase osi_circ_003879
Alias 2:14386762|14388096
Organism Oryza sativa ssp. indica
Position chr2: 14386762-14388096  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA008107
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008107_circ_g.2 BGIOSGA008107_circ_g.4 BGIOSGA008107_circ_g.5 BGIOSGA008107_circ_g.6 BGIOSGA008107_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA008107-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGGAACTTTGGGATGAACGTATCTCAAGTTCATCTGGACAGAATTCCCATTTGGTGTCTAAGG
CAACTCGTTTGTGGGAAACAATATTGGCTCGCAAAGatttgttgagctattgtggcaactctct
gtgcatgccttgagagaagtccacaggagaacatttgctgctgatgttgcatcaagcccgctgc
ctgcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTGTTGAGCTATTGTGGCAACTCTCTGTGCATGCCTTGAGAGAAGTCCACAGGAGAACATTT
GCTGCTGATGTTGCATCAAGCCCGCTGCCTGCAGCACTCACAGACGTCTCTTATCTACATGCCG
CTGCATTACTCCCTGTGACTAAGGCAAGGATGGCTGACTCTTCAATTTTCTGAAAACTGGTTGG
TTGTTTAGTCTGTCTTAAGATGACTCTGCAGCAGATGTTCATCAGTCTTAAAATAGGTTATTCG
TAGAGAACATAATTTCATAGAGGATATACTTGGTTTGAGGCTTTTTATCCCTGTGAGCATACTT
GTATACTCCTGCAATGCTCAAGACATTTGACACCTAGCATAGATTATTTGTAGAGAACATAACT
GAGACTGAGGTGTTATTTTGTTAGGTGTTACATTATGAAAACAAAATAACACCTTAGTCTCAGT
TTATTGATATGTGTGCAATAGCTGAAGCAAGATTCTATTGCTTCATTTCTTGAGAATGGTGATC
CAGTAGGCCCCATATCAAGTCCAATTCTTAGTTGCTCTTGATTTTTTTTTTTTGAAATGGGTGT
TCTTGATGACTTGTTTACTTGTCTATAAGGAAGGTTGATTATGGTTGATGTTTGTATGCTATAA
AACATAATGTTCATACAGAGACCATGAATACATAAGACAAATATGGATTTGAGTAAGAGGCAGC
CTAATAGTGTGTGATGATTGTAATATACTGTGGTAGGCAATCAAATATTTCTTATGTCCATAGT
TGGTAGGATAACTTGTCTGAATATGAGGAGCACCATTTCTATTAGTGGGGAACAAAATGTGTCT
GTTGTTCCTCCTTGTAGCAGAAACTTCCCATGATACACGAGCATATTTCTCCTTATACATTTGT
ATAGCAATCCAGATTTAGTTATTTGAGATTTTTAAACTGTAAATTATGTTCTCCTTGTGCTATT
CCAAACAGGCAAGGATAGCTCTTGAGAGGCGTAAATTTCTAAAAAATGCAAGTATTGCTGTTCA
AAGGCAAACAACCTGGTCAAATTTAGCCCATGAAATGACAGCTGAATTCCGAAGTCTTTGTGCT
GAAGAGGTACACAGAAACTTCTGTGATGTTCATTCAGATAGTTGTGTTGCATCCTGTTCTTATT
ATCACTTCATCTGGAATTTTCAGGCCTACCTACAGCAGGAGTTAGAGAAGCTGCAAGACATGCG
AAACAAATCCAAACTGGAAGGGGAACTTTGGGATGAACGTATCTCAAGTTCATCTGGACAGAAT
TCCCATTTGGTGTCTAAGGCAACTCGTTTGTGGGAAACAATATTGGCTCGCAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 14386843-14388029(-)
14387821-14386799(+)
14388011-14386767(+)
Potential amino acid sequence MQHQQQMFSCGLLSRHAQRVATIAQQIFASQYCFPQTSCLRHQMGILSR*(-)
MTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELWDERISSSSGQNSHLVSKATRLWETILAR
KDLLSYCGNSLCMP*(+)
MNVSQVHLDRIPIWCLRQLVCGKQYWLAKIC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021