Detail information of BGIOSGA008107_circ_g.4


General Information
CircRNA Name BGIOSGA008107_circ_g.4
ID in PlantcircBase osi_circ_003880
Alias 2:14386762|14391089
Organism Oryza sativa ssp. indica
Position chr2: 14386762-14391089  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA008107
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008107_circ_g.2 BGIOSGA008107_circ_g.3 BGIOSGA008107_circ_g.5 BGIOSGA008107_circ_g.6 BGIOSGA008107_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA008107-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACTACTCCGAAGTGCATCTGATGGTGAAACTAGTACCCATGCTGACTCATTAACGGCAACA
TTGGCTGAACATCGTCAGCACTTAGTCAGTATACAGatttgttgagctattgtggcaactctct
gtgcatgccttgagagaagtccacaggagaacatttgctgctgatgttgcatcaagcccgctgc
ctgcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTGTTGAGCTATTGTGGCAACTCTCTGTGCATGCCTTGAGAGAAGTCCACAGGAGAACATTT
GCTGCTGATGTTGCATCAAGCCCGCTGCCTGCAGCACTCACAGACGTCTCTTATCTACATGCCG
CTGCATTACTCCCTGTGACTAAGGCAAGGATGGCTGACTCTTCAATTTTCTGAAAACTGGTTGG
TTGTTTAGTCTGTCTTAAGATGACTCTGCAGCAGATGTTCATCAGTCTTAAAATAGGTTATTCG
TAGAGAACATAATTTCATAGAGGATATACTTGGTTTGAGGCTTTTTATCCCTGTGAGCATACTT
GTATACTCCTGCAATGCTCAAGACATTTGACACCTAGCATAGATTATTTGTAGAGAACATAACT
GAGACTGAGGTGTTATTTTGTTAGGTGTTACATTATGAAAACAAAATAACACCTTAGTCTCAGT
TTATTGATATGTGTGCAATAGCTGAAGCAAGATTCTATTGCTTCATTTCTTGAGAATGGTGATC
CAGTAGGCCCCATATCAAGTCCAATTCTTAGTTGCTCTTGATTTTTTTTTTTTGAAATGGGTGT
TCTTGATGACTTGTTTACTTGTCTATAAGGAAGGTTGATTATGGTTGATGTTTGTATGCTATAA
AACATAATGTTCATACAGAGACCATGAATACATAAGACAAATATGGATTTGAGTAAGAGGCAGC
CTAATAGTGTGTGATGATTGTAATATACTGTGGTAGGCAATCAAATATTTCTTATGTCCATAGT
TGGTAGGATAACTTGTCTGAATATGAGGAGCACCATTTCTATTAGTGGGGAACAAAATGTGTCT
GTTGTTCCTCCTTGTAGCAGAAACTTCCCATGATACACGAGCATATTTCTCCTTATACATTTGT
ATAGCAATCCAGATTTAGTTATTTGAGATTTTTAAACTGTAAATTATGTTCTCCTTGTGCTATT
CCAAACAGGCAAGGATAGCTCTTGAGAGGCGTAAATTTCTAAAAAATGCAAGTATTGCTGTTCA
AAGGCAAACAACCTGGTCAAATTTAGCCCATGAAATGACAGCTGAATTCCGAAGTCTTTGTGCT
GAAGAGGTACACAGAAACTTCTGTGATGTTCATTCAGATAGTTGTGTTGCATCCTGTTCTTATT
ATCACTTCATCTGGAATTTTCAGGCCTACCTACAGCAGGAGTTAGAGAAGCTGCAAGACATGCG
AAACAAATCCAAACTGGAAGGGGAACTTTGGGATGAACGTATCTCAAGTTCATCTGGACAGAAT
TCCCATTTGGTGTCTAAGGCAACTCGTTTGTGGGAAACAATATTGGCTCGCAAAGGTACGCTGT
TTATTAGAATATGCCCCTTTGTTGTCTGATGAAGTTAATTCAAGCTTAAGATTAGTTTGTGTTA
GTAATTGACACAATAGTGTATAGTTCCACATCATGTATGATGAGTTATCTTGTACTTGGGTTAA
GGGACATGTAGCATGAAAGAGTTAGATGCTTCTTCTATTCTTTTCTCTGGCACAACTAGGTCAT
TTTACAATCCAAACAGTTTGGAGAGAATCAATGAACTCCTTTTATGGAGAAATCCATACTTCCT
GAATGCAGCATTCCTTCTGCCCTTGAATATTATTTGTCATTATGACATTCCCAAAAAAACCAGT
TTCTTTTGAGAAATCAACTGAAGCTTGGCTTGTTTATGGTTTGGTTTTGTCTGTGGACTATTCT
GGTGATAAACCTGAGCAAATATGCTAATAGCAAGCCATACCCTGGAGATAGCACCAGTGCTACC
AGGGCACGTGTCCAAAATAATTTTCGCAGGTTGACACGCATTGGCTTATTGAGTCACGTCCAAC
AGTGTGACACATACCAGTGTCGAAGCTGGGGGAGGGTCCTTTGCTGTGCTCTTTGTTCAGGATG
TGTTGAGGCTAACCATTTTAAGCCTATTTGCTTTTTATTTCTGAAGGACATATAGTATTTTAAA
TTTTAATGTGTTTATGAATGCATGCCAAACTCATAGTCTTGGTTGTGTTTCTTCATGCACGAGG
TTCCTCTGCTTCTTTGTGCTTTCTCTACCTGTTTTATCAGCTCCATGTTTGTGCACTTCACTTC
TGCAGCCTGAGGCTTTCTGCTGTCCTTATTATACTAGCATAATATGATTAATGCTTAGTTATCT
TTATTTGATGGGAGTATGTTTAGTTCTTACTATTTTTTATGATAATATAATTTATTTTAGGAGA
ATTCTAGAATCCTATTTTTCTATATTTTGCCAGATCAAACACCAGATTCCGAATCAGACTCTGA
CTCTCCTATTGAGTCCTGGTAAAATTGAGTCCATTTTGCACTTGAAAACTGTTTGTTATTAAAA
TAAAACCTATAGGTCTTCATTATTATGCCATCCTTGGCAAACAATGTTGTTTCTTTACATAACG
TTGAGGGCCATGGCGGTACTTTTAATTTCAGATATTAATAGGTGATACCTTTCAGGCCAACATG
AGGTCTTAGCTTCTGGACCAATTGAAGATCTTATAGCACATCGTGAGCATAGGTGTGTTCCACT
CCAACTTTGTTGTTTATCCGTATATCTGGTTCTATCATTATCTCATCATTTTTCACAAAATGGA
TTATATTAGGTACCGTATATCAGGATCTCAATTGCTAGCAGCAATGGATTTGAGTTCAAGCGTT
CCACATTCTGAGTTACTATCAGCTCGAGCTAGTGAAGCGTCTCCATTTTTGGACAAACAAGAAC
AGATGTCTGCTCTATTCCAAGGAAAGGAAGAAGCCCTCTCAAGGTTAGATGATAGGAATGGACG
TGCTCAACAACAGACTGTTGATGTGGCTGAAATTCTTCGCCGTTGGACTCATGCTTTACAGCGT
ATTCATAAACAGTCTCTTCATTTGGTACGCTATTCTTACATTAATTTTGATGAGTTTAATGGCA
TTCTTATGCATTTAATTTATTTGAAGTTTTGAACGCGTCTGCTTTCATATAGAAATATGTGCAT
TCAACCTTTCACAACTACTGTCACTGTGAAAGTTTGACTTTCTGTCTTTCAGCTGTAAACTACA
AAACTTGCAGTCTGATCACCCTCAACTGGCTATGATGTGCAAACCATCATCCTTGTCCAAAATA
ATCGTTGTTTCAATGATGCGAAACATACCCTAGCTCTTCTATTCACATGCTTCAACTAATTGAC
TTCCTAGTCAATTATTCCTCATCTTATTTCATCAAAGTTATCAGATCCTTTTTTCATCCTCAAA
ATCAATGTCTTCCTCATCTTATTCCTCCATTTATGCCTTCAGTGTTACCATTAGGAGATCCAAT
TCTGGCGCTCCCTTCACCTATCCGATGCTCATATTGTCACACTCTCGAATGCCACCAATCTCAA
CCTGCCTCCTTTGCAGCCCCTTGTGGCCATCTTGCCATAGTTACCAATCCACTTCTGGTGCTTG
ATCTAGCTACCCCTGATTCTGTTTCCTGTCTCCCCTGGTGTTTCAGCAGCAATGACACTTGTAT
GCTGGCCATACTAATCTCATCATTCGTAGACATTTAAAACTTCAGCATTGATAATTTGAATCCC
CTTATTAGTGGTTGAAGTATTATAGCATTTCCAAAACATTAAATGAAGTATTTACTTGCAGGTG
GTTAATATGACTGTTTTGTAATAGGTGCCATTCAATGCTTAGCGTTGATATGTGTTAAAAGTGA
AGTTATACATCATTTTTATGTTTCACAACTGATACTATTGTAGATGGCTAAGTATGCATAAAAC
TATAATTCCATATGATTATCGAACTGATTTTTTCCATAAATTGTGGAAAATAAAATAATAGGAA
CTTCTAATTGTTTTCTTTTCCGTCCTTTGCTGTATTTTTTCAGTTCTGATATCACTATTTCAGG
AAATACTAGAGCACTTTAAATCAAGGATATAAAATAATCTTCTGCATCACCCATATTTGTTGGT
TGCATTGCATATTTGGCGCCATATTGGTATCTAATGCATATTAAGTACTGGTATGGTGAGTTTT
TAGAGGATTCTATGTTGTCTGCTGGCGGTTAGGCAAGCTCCTGGGCAATGATGGGGTCCTGGAC
TTGGTCAATACAGCTCTTGTCTGAAACCTAGGCACAACAGACTTGTGCAGTATTTATGCATTAT
ATCTTCCGTTAGCTAACATGTAGCTGTGTACTAATTTGACAGGCCAAAGCAAATGATGGAGATG
GACCAGAACTACTCCGAAGTGCATCTGATGGTGAAACTAGTACCCATGCTGACTCATTAACGGC
AACATTGGCTGAACATCGTCAGCACTTAGTCAGTATACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 14386843-14391070(-)
14387821-14386767(+)
Potential amino acid sequence MQHQQQMFSCGLLSRHAQRVATIAQQICILTKC*(-)
MTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELWDERISSSSGQNSHLVSKATRLWETILAR
KGQHEVLASGPIEDLIAHREHRYRISGSQLLAAMDLSSSVPHSELLSARASEASPFLDKQEQMS
ALFQGKEEALSRLDDRNGRAQQQTVDVAEILRRWTHALQRIHKQSLHLAKANDGDGPELLRSAS
DGETSTHADSLTATLAEHRQHLVSIQIC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021