Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA008107_circ_g.4 |
ID in PlantcircBase | osi_circ_003880 |
Alias | 2:14386762|14391089 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 14386762-14391089 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA008107 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA008107_circ_g.2 BGIOSGA008107_circ_g.3 BGIOSGA008107_circ_g.5 BGIOSGA008107_circ_g.6 BGIOSGA008107_circ_g.7 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA008107-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14386843-14391070(-) 14387821-14386767(+) |
Potential amino acid sequence |
MQHQQQMFSCGLLSRHAQRVATIAQQICILTKC*(-) MTAEFRSLCAEEAYLQQELEKLQDMRNKSKLEGELWDERISSSSGQNSHLVSKATRLWETILAR KGQHEVLASGPIEDLIAHREHRYRISGSQLLAAMDLSSSVPHSELLSARASEASPFLDKQEQMS ALFQGKEEALSRLDDRNGRAQQQTVDVAEILRRWTHALQRIHKQSLHLAKANDGDGPELLRSAS DGETSTHADSLTATLAEHRQHLVSIQIC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |