Plant Circular RNA Database

Detail information of 4_circ_igg.10

			
						 General Information
					
						CircRNA Name
						4_circ_igg.10
					
						ID in PlantcircBase
						ath_circ_030733
					
						Alias
						At_ciR583, Ath_circ_FC2626, AtciR117
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 7887116-7887618  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRI, circRNA_finder, circseq_cup, find_circ, CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							4_circ_igg.8 4_circ_igg.9 						
					
						Support reads
						5/8
					
						Tissues
						leaf/leaf, aerial
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	4_circ_igg.10
ID in PlantcircBase	ath_circ_030733
Alias	At_ciR583, Ath_circ_FC2626, AtciR117
Organism	Arabidpsis thaliana
Position	chr4: 7887116-7887618 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	CIRI, circRNA_finder, circseq_cup, find_circ, CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	4_circ_igg.8 4_circ_igg.9
Support reads	5/8
Tissues	leaf/leaf, aerial
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGG
CTGTGTTCTTGTCTTGCTATGCTACGATATATATATcgttgacacaaagcatccgtgcatcatt
tctgtcactttttccgacaaagcacgtatattctgtctactttcatcacagatctacgcagtaa
ttaacaaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 201
Transcript exons: 7887116-7887188,7887491-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCACTGCCGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTC
AACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGA
TATATATAT
Transcript length: 209
Transcript exons: 7887116-7887158,7887453-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCTCCCGTACTGCTACAAAAGCA
AATCTAACGTTGACACACTGCCGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCT
TCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTA
TGCTACGATATATATAT
Transcript length: 232
Transcript exons: 7887116-7887179,7887451-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGCTATA
TCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGG
GCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 236
Transcript exons: 7887116-7887179,7887447-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGC
TATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCT
TTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 236
Transcript exons: 7887116-7887180,7887448-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGC
TATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCT
TTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 239
Transcript exons: 7887116-7887193,7887458-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCACATACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAG
AGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGT
TCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 240
Transcript exons: 7887116-7887190,7887454-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGA
GAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGG
TTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 241
Transcript exons: 7887116-7887184,7887447-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCG
AGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTG
GTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 244
Transcript exons: 7887116-7887184,7887444-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACA
CCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTT
TTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 245
Transcript exons: 7887116-7887195,7887454-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCACAGACCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTAC
ACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTT
TTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 248
Transcript exons: 7887116-7887190,7887446-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGAT
TACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAA
GTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 252
Transcript exons: 7887116-7887194,7887446-7887618
CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCACAGTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGC
CGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAG
AGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
Transcript length: 329
Transcript exons: 7887116-7887618
ATGGATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACAC
CGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTT
TGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATATCGTTGACACAAAG
CATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGTCTACTTTCATCAC
AGATCATATCGACAGTGTAATCCATTGGAGAATTCTTTCAGTTTTTCTTTGCTTGCTTGGTCTT
AATCCTGAA
						
					

						Genomic sequence
						
							CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT
CTACTTTCATCACAGATCTACGCAGTAATTAACAAAATATCTATTAAGAATCAAAAACACATAG
AAAAAGAGAATAAAAACCAACTGATTAGATCTAAATCTGTATCGTTTTCGCTAACCATATCGAC
AGTGTAATCCATTGGAGAATTCTTTCAGTTTTTCTTTGCTTGCTTGGTCTTAATCCTAAATCAA
TAAAAGTTAAATAGTTTAAGACAAGTATATCTGAAATTTGATCGAATATTTTATATTGCTTGCC
TGAAATGGATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATT
ACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAG
TTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT
						
					

			
		

Sequences
Splice junction sequence	CTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGG CTGTGTTCTTGTCTTGCTATGCTACGATATATATATcgttgacacaaagcatccgtgcatcatt tctgtcactttttccgacaaagcacgtatattctgtctactttcatcacagatctacgcagtaa ttaacaaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 201 Transcript exons: 7887116-7887188,7887491-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCACTGCCGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTC AACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGA TATATATAT Transcript length: 209 Transcript exons: 7887116-7887158,7887453-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCTCCCGTACTGCTACAAAAGCA AATCTAACGTTGACACACTGCCGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCT TCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTA TGCTACGATATATATAT Transcript length: 232 Transcript exons: 7887116-7887179,7887451-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGCTATA TCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCTTTGG GCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 236 Transcript exons: 7887116-7887179,7887447-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGC TATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCT TTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 236 Transcript exons: 7887116-7887180,7887448-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAGAGC TATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGTTCT TTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 239 Transcript exons: 7887116-7887193,7887458-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCACATACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGAG AGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGGT TCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 240 Transcript exons: 7887116-7887190,7887454-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCGA GAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTGG TTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 241 Transcript exons: 7887116-7887184,7887447-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACACCG AGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTTTG GTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 244 Transcript exons: 7887116-7887184,7887444-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACA CCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTT TTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 245 Transcript exons: 7887116-7887195,7887454-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCACAGACCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTAC ACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTT TTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 248 Transcript exons: 7887116-7887190,7887446-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGAT TACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAA GTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 252 Transcript exons: 7887116-7887194,7887446-7887618 CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCACAGTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGC CGATTACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAG AGAAGTTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT Transcript length: 329 Transcript exons: 7887116-7887618 ATGGATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATTACAC CGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAGTTTT TGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATATCGTTGACACAAAG CATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGTCTACTTTCATCAC AGATCATATCGACAGTGTAATCCATTGGAGAATTCTTTCAGTTTTTCTTTGCTTGCTTGGTCTT AATCCTGAA
Genomic sequence	CGTTGACACAAAGCATCCGTGCATCATTTCTGTCACTTTTTCCGACAAAGCACGTATATTCTGT CTACTTTCATCACAGATCTACGCAGTAATTAACAAAATATCTATTAAGAATCAAAAACACATAG AAAAAGAGAATAAAAACCAACTGATTAGATCTAAATCTGTATCGTTTTCGCTAACCATATCGAC AGTGTAATCCATTGGAGAATTCTTTCAGTTTTTCTTTGCTTGCTTGGTCTTAATCCTAAATCAA TAAAAGTTAAATAGTTTAAGACAAGTATATCTGAAATTTGATCGAATATTTTATATTGCTTGCC TGAAATGGATTCCTTCTTCCCGTACTGCTACAAAAGCAAATCTAACGTTGACACACTGCCGATT ACACCGAGAGCTATATCTTCTCGCCTTTGGATTCTGCTTCATCTTCAACCATGGATCAGAGAAG TTTTTGGTTCTTTGGGCGGCTGTGTTCTTGTCTTGCTATGCTACGATATATATAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.385926033

Conservation Information
Conserved circRNAs	NA
PMCS	0.385926033

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a;Zhang et al., 2019

circRNA

Detail information of 4_circ_igg.10

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