Detail information of BGIOSGA002700_circ_g.4


General Information
CircRNA Name BGIOSGA002700_circ_g.4
ID in PlantcircBase osi_circ_009522
Alias Chr01:1586763_1588593(MH63RS2), Chr01:1586763_1588593(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1904228-1906058  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA002700
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002700_circ_igg.1 BGIOSGA002700_circ_igg.2 BGIOSGA002700_circ_igg.3 BGIOSGA002700_circ_g.1 BGIOSGA002700_circ_g.2 BGIOSGA002700_circ_g.3 BGIOSGA002700_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA002700-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATAGCCGTGAAGTATGGGTTCCACTTGAAAAGGTGGATTCAGGAGAGATCAGGCTTCAAATA
GAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAGggttaagcttttgaccgaaaccatagtg
aagacaatggttgagcctcgcagattgtgtttttctttgccaccagtagatttaaggaaacgag
cagttgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTAAGCTTTTGACCGAAACCATAGTGAAGACAATGGTTGAGCCTCGCAGATTGTGTTTTTCT
TTGCCACCAGTAGATTTAAGGAAACGAGCAGTTGGAGGTGTTCTTTCAGTCACAGTTGTTTCAG
CTAGTAACGTTGGGAGAAACACAACTAATGAAACAGGGATCCGCCAAAGCTCAAGTGGAGGTTC
TACATCTGGAATTGCTGATAACAAGGTATCACAGACATTTATTGAGGTAGAAGTTGGTAGTTTA
GTGAGAAAAACAAGTACAAGCAAGGGTCCAAACCCTGCATGGAATAGCACATTTAACCTGGTAT
TGCATGGAGAGACAGGTGTTGTCAAGTTCAATCTGTATGAATTGGACTCTGGTGGTGTTAAGGT
CACCTACTTGACAAGCTGCGAGATAAAGGTATGACAGTTAAACTTATTATTTTAGTCAGTTTCC
ATTGCACATGATGCAGTTGTGGTTCTTCCAACACATCTAAAGGATGCTGATGAAAGTAATGTAA
ACAGGTCAAGTATGTTCTAGATGATTCAACAATATTTTGGGCTATAGGACATAATTCTGGTGCT
GTTGCAAAACGTACTGAGCTTTGTGGACAAGAAGTTGGAATGGTTGTTCCATTTGAGGACATCA
GGGGCGAGGTACATCTCTATAGTAACTACTGATGTGTTGTCACTGTTTCTCTTGCATCCAAAAC
CTGTTTTGGATATGCTGTAACATTTAGAAAAATGGATTCCCAATTGATTGAAGTGCTAATTAGT
TTTATCAAGCCACCGAAGCAAATTTTCACTAGCCTATCAGGTTTGAAATTATGCCATATTTGAT
ATACTCGATACAAACTGTGAAGTAACAGATTTTAGGAGTTTAGGACCTCAGGTCCTCAGCTACT
TGTATAGCCTAAAGTTCTAATGACCCATAGTCCTACATTTGATTTCCTGTTGAACTTTATTTAC
AGTTGGGTTGTTTTATAAATTACAAAAGAGTAAGTTCGACCTGTTGAATTGGTAGCGCTTTTGG
AATCAAGATCGGAAGAGAGAGGATCAGGAAAATGTTCAGCCCTTTTTTTTTAGAAACAACCTGT
GGAAGTAACAATGGTTTCATTCAGTTGGGCTTGAGAGCTCTGGAGATATAATACATAAAGGATA
GACTACTGACAGAGTGACCAGAAATGTGGGGTTTTGATGATGAATTATGATGTTTCTGTTCCCA
AGTTGTGTAATACTGTTCCAAACTCTTTCCCTTGCAGTTAACTGTCACTCTTGTGCTAAAAGAA
TGGCAATTCTCTGATGGCTCAGTTACGTTGAGCAATTCTCTGAGCAACGGATCCCACTCTTCAT
TTGATGTATCGCCCAAGCTTCAGTCCAGAACAGGACGGAAACTCAGAGTTGCAGTAGTTGAGGG
TAAAGCCCTTGCAGTTAACGGTAAATCTGGAAAGTGTGATCCATATGTGAAGGTGCAGTATGGA
AAGGTTTGTTGTTACCTTGCCCAAAGTTTAGCTTCACTTACTATTATACAAGTTGGTATTCTAA
TCCCATATTCTTTTTATAGGCTCTATACAAAACAAAAACACTATCTCATACAACTCGACCGGTT
TGGAATGATAAATTCGAGTTTGATGAGATCACTGGTGGTGAATATCTCAAGATCAAATGCTATA
GTGCAGATACATTTGGAGACGAAAGCATTGGCAGCGCAAGAGTAAATCTAGAAGGACTTTTAGA
TGGTGATAGCCGTGAAGTATGGGTTCCACTTGAAAAGGTGGATTCAGGAGAGATCAGGCTTCAA
ATAGAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021