Detail information of BGIOSGA002700_circ_igg.1


General Information
CircRNA Name BGIOSGA002700_circ_igg.1
ID in PlantcircBase osi_circ_009520
Alias Chr01:1583806_1587410(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1901270-1904875  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA002700_circ_igg.2 BGIOSGA002700_circ_igg.3 BGIOSGA002700_circ_g.1 BGIOSGA002700_circ_g.2 BGIOSGA002700_circ_g.3 BGIOSGA002700_circ_g.4 BGIOSGA002700_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGGCTATAGGACATAATTCTGGTGCTGTTGCAAAACGTACTGAGCTTTGTGGACAAGAAGTT
GGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAGggtggacaggtatccaatacccacagtg
caaaaggggccagtgacaggaactcgggaagcagtggaaacaaaggccaaaaaaaacaacaaaa
ggtatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGACAGGTATCCAATACCCACAGTGCAAAAGGGGCCAGTGACAGGAACTCGGGAAGCAGTG
GAAACAAAGGCCAAAAAAAACAACAAAAGGTATCTGCATCAAGCTCTGTGTGGCATCAGAGAAG
AGAGCTTTGCTGAATTCACAGAGCAGCAGGGAGGAGAGATGGCGAAGAAGAAGCTGAAGAAATT
GCATGCCAAGGATGCACTAGAATTTTTCAACCAGGTCATGGTGGAGCAGCCCTTGCTCCCCTTC
CTTGTCCCTCTTGTCTTGTTTGCATGGTTTGTTGAACGATGGGTTGTGCCATTCTCAAACTGGG
TTCCCCTGTTGGCTGCTGTATGGGCAACAATTCAGGTAGTTTTTCCTTCCCATGGTATTCATAT
GGATAAAGTTGTTCTTTGATGAATTTGGCTTGGCTTCTTTGATGTCCTGCTGAATTGTCAGACA
AATAGTCCTTTTCTAGGTGTTGAGATAGTACTAATTTACTGCAAGTATTGCTTGTTGCTTGGTT
TGGAAGTGCTGATCTATTCTTTTGAGTTGCAGAGTGTTCATAATTCTGAAAAGAATAACACAGA
GAAACACCTCGCCCCACTTTCTAGAGTTTATTTTGTCTTCTTACTATTTTTATTTTAATGATGA
ATGCAGTATGGGAGGTTTAAAAGGAGGTCAGCCATAGAAGATTTGAACAAACGATGGAAGCATC
TTATACTGAATACAACAGTATATTCCTTCACTTATTTTTTTTTGTTTTGCTCTTTATACATGAA
CTTTTAGCAATACCCCTTTTGTATCTCTTGTAGCCTACGACGCCAATAGAGCCTTGCGAGTGGT
TGAACAAACTTTTGGTAGAAGTTTGGCCCAATTATATGGAACCAAAACTGTCAAAGAAGTTTCA
ATCTACTGTTGAGGTCAGCTTCTGCACATTTGCTAGATAATTTTATGAATCTTTTGAGCACTAG
GATGCTAGAAAATGAAGGTGCTATCATTTGTGAAAGTTTCTATTACGTCTAATAGTTTTTGCTT
GGATGTAATAATTATTGGTTTTAAAAGCTTTTGGAAATATACCTTTTGAGTTTCTTTGGTGATG
ATTATCTCAAAATAAAATTCATTAGAAAATTTCTCAGCTTGTTGTAAAACAACAACCATGTTTG
TTGCCCAATTGTTTTAACCTTCTCCAATCTTAATAAAATTGGCTGGGGCACTTCTTCGCTGCCG
GCCTGGCCATTTTTTTTTCTCAGCTCCATTGCTCCTATTTATTTGTTGTAGTCAAATAGTCAAT
ATGCATTGCAAGATATGGTGCACACTGGCTTCTATTCTGCTTTTTTTATAACCAGCTGACCAGT
GAGTGTTCTCTGAATTTGCAGAAACGTTTAAAGCATCGAAAACCAAAACTAATAGTAAGTTCTC
TTAAAGTTGTTTATCCTCTCCTGCTGCTATTCTGACTGTAGTACTAATGATTTGCTTTTATATC
TCTCCAGGATAAAATAGAGTTACAGGAGTTCTCACTTGGTTGTTGTCCACCTACCTTGGGGGAG
CATGGGATGCGCTGGATGACTTCAGGTGACCAGGTCAGATATTAATATTCTGTACTGTGTATGG
GATACTCACCTGTGGTAAACTTAGAGAGGGAGGAAATCATTGCCTCAGGCACTGATCATTATTG
AAAGAACTGCTTATGCTGTTTTTAGTTCTACAGAATTATAACAGCGGTGATTTAGCTTATTTGC
TCTGCTTCATAAATTCCGAGTTGTGCTGTTTTGGGTGCTAGTTTGGTTAACTTATCCTTACATC
ATTGAAAACACTAACGAATGCAGTGTCATCAATGGTTTATTCACCTTTTCTGATTATAACTATG
CATCTGTATAACTAACCCATGTGTTCTTCCATTATCTGTAACTAACCCATGTGTTCTTCCATTA
TCTGTTAGGAATATATAACATGTTCTGCAGCTCTTCCTGATCCTGCATAGCCTTAGTCATTAGT
TGTTCCATCTTGAACAATATTATGTTGTAAGTAGGAGAGGCAGATGAAATACTTCTGTTGGTTG
TACAGTTGCACACTTCAACTCTCGTTTTTTGAACATGCAGAAAGTCATGCGCTTGGGTTTTGAT
TGGGACAGCAATGAGATGAGTGTAATGTTTTTGGCAAAATTAGCAAAACCACTGATTGGCGCTG
CTCGAATTGTTATAAACAGCATTCACATCAAGGGAGATGTATGTCCTTTGCTCTTTCAATTGAT
TCTGTTACATTGTTATTGTTATTGTTATTTCTCATTTATCTTGATTTGAGAGAGACTTCTTTTG
AATTGGTAAGCAAGAATTGTCGCCAGCTTTGCTCACTGAGATCGCAAAGCTGATAATGAACAAT
CATGATGAACAAAAATGGTTTTGGCTTTTCGGAGTCATTCCTGTCCTTAATGGTTGACATAGGA
TATTATGATGTAGTTAACCTGCCTCTCACATAGGATAAAGTGGCAACCTTATTTTGAGCTATTT
CACTTTAGCGTTTTGTTGAAACACAATAAATTTTGTGTGGATAAGAACTTGGATCACTGCTTAC
GTTAAAATCTTTTATTTGCTTTCTTGTCCTGAGTATTATATCTGTATTTGACGATTATTTTCTT
GTCTAAGCGCATTTTCTAGTTGGCTCATCAGATTAAGCTCTTATTTTCTTCGATTTAAACTATA
TCTTTGCAGCTTCTACTGTTACCCATCCTTGATGGTGAAGCTATTCTTTATTCTTTTGAATCCA
CTCCAGAAGTCAGGATAGGAGTGGCATTTGGAAGTGGTGGAAGCCAAGCAGTTCCTGGTATGGA
GCTACCCGGTGTCTCAACATGGCTGGTGGGTTTGTGTGTGCCATTTAGTTAGTCCTTGGTATCT
TTGCAATTCTTTTAGTGCAATTACGGCCATTGCGTATTGAAATTTGAATGCTAAATGTGATGCT
TCATGAGCCATGCAGGTTAAGCTTTTGACCGAAACCATAGTGAAGACAATGGTTGAGCCTCGCA
GATTGTGTTTTTCTTTGCCACCAGTAGATTTAAGGAAACGAGCAGTTGGAGGTGTTCTTTCAGT
CACAGTTGTTTCAGCTAGTAACGTTGGGAGAAACACAACTAATGAAACAGGGATCCGCCAAAGC
TCAAGTGGAGGTTCTACATCTGGAATTGCTGATAACAAGGTATCACAGACATTTATTGAGGTAG
AAGTTGGTAGTTTAGTGAGAAAAACAAGTACAAGCAAGGGTCCAAACCCTGCATGGAATAGCAC
ATTTAACCTGGTATTGCATGGAGAGACAGGTGTTGTCAAGTTCAATCTGTATGAATTGGACTCT
GGTGGTGTTAAGGTCACCTACTTGACAAGCTGCGAGATAAAGGTATGACAGTTAAACTTATTAT
TTTAGTCAGTTTCCATTGCACATGATGCAGTTGTGGTTCTTCCAACACATCTAAAGGATGCTGA
TGAAAGTAATGTAAACAGGTCAAGTATGTTCTAGATGATTCAACAATATTTTGGGCTATAGGAC
ATAATTCTGGTGCTGTTGCAAAACGTACTGAGCTTTGTGGACAAGAAGTTGGAATGGTTGTTCC
ATTTGAGGACATCAGGGGCGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021