Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA006669_circ_g.3 |
ID in PlantcircBase | osi_circ_003833 |
Alias | 2:11774098|11776397 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 11774098-11776397 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA006669 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA006669_circ_g.1 BGIOSGA006669_circ_g.2 BGIOSGA006669_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA006669-TA:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11774196-11776203(-) 11775570-11776203(-) 11776342-11774115(+) |
Potential amino acid sequence |
MILQGPEHHQLVTLSLLTELFMSSEFTLLRRQHRPIASIAFHARGEILAVASGHKLYIWNYNKR DEAAAPTIILRTRRSLRAVHFHPHGAPYLLTAEVNNLDSADSPLTLATSSGYSNYPSAVFFANI NSRNCPHHEANSSSPCLLWPAYLRDDGSLCLIRNDLVSSSTNVHQRPSSLAQNPLASDVENQQP DQLVTPMDVCPGEPSTSHASASGLSGVEMQIDRGQPSSRLLGSSSTSNHESSTARDDVQMPSLS NSVPIPATSQPSEHDGRHGMPMNSFTTSSGLDVHMILRNSEGGNHHHDLFSDSRSWELPFLQGW FMAQNHTGASPSIPIDVGSSRGSNRHHASRRHVVGSLRGVGSSLLGPQIDEAEVHAASLGVGSE LTTSLLAAGAAELPCTVKLRIWRHDIKDPCVTLEPEACRLTISHAVLCSEMGAHFSPCGRFLVA CVACLLPQTEGDRGSQLPVQYDSAGAGTSPTRHPLPSHRVIYELRVYSLEEATSANCINSISCK GGDSGSCIRSQTVHMELQ*(-) MDVCPGEPSTSHASASGLSGVEMQIDRGQPSSRLLGSSSTSNHESSTARDDVQMPSLSNSVPIP ATSQPSEHDGRHGMPMNSFTTSSGLDVHMILRNSEGGNHHHDLFSDSRSWELPFLQGWFMAQNH TGASPSIPIDVGSSRGSNRHHASRRHVVGSLRGVGSSLLGPQIDEAEVHAASLGVGSELTTSLL AAGAAELPCTVKLRIWRHDIKDPCVTLEPEACRLTISHAVLCSEMGAHFSPCGRFLVACVACLL PQTEGDRGSQLPVQYDSAGAGTSPTRHPLPSHRVIYELRVYSLEEATSANCINSISCKGGDSGS CIRSQTVHMELQ*(-) MQLPESPPLHEMLLMQLADVASSRE*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |