Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G16540_circ_g.7 |
ID in PlantcircBase | ath_circ_002915 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5664005-5664590 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G16540 |
Parent gene annotation |
molybdenum cofactor sulfurase (LOS5) (ABA3) |
Parent gene strand | + |
Alternative splicing | AT1G16540_circ_g.6 AT1G16540_circ_g.8 AT1G16540_circ_g.9 |
Support reads | 1 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G16540.1:3 AT1G16540.2:3 AT1G16540.3:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.182047739 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5664028-5664587(+) |
Potential amino acid sequence |
MVQGLTGEILTQKKVPEMSLIKTFIDLEEGLLSVESSRCEDKLHIRIKSDSYNPRNDEFDSHAN ILENRNEETRINRWFTNAIGRQCKLLRYSSSTSKDCLNRNKSPGLCRDLESNINFANEAQFLLI SEESVADLNRRLEASLLHDREWMVQGLTGEILTQKKVPEMSLIKTFIDLEEGLLSVESSRCEDK LHIRIKSDSYNPRNDEFDSHANILENRNEETRINRWFTNAIGRQCKLLRYSSSTSKDCLNRNKS PGLCRDLESNINFANEAQFLLISEESVADLNRRLEASLLHDREWMVQGLTGEILTQKKVPEMSL IKTFIDLEEGLLSVESSRCEDKLHIRIKSDSYNPRNDEFDSHANILENRNEETRINRWFTNAIG RQCKLLRYSSSTSKDCLNRNKSPGLCRDLESNINFANEAQFLLISEESVADLNRRLEASLLHDR EWMVQGLTGEILTQKKVPEMSLIKTFIDLEEGLLSVESSRCEDKLHIRIKSDSYNPRNDEFDSH ANILENRNEETRINRWFTNAIGRQCKLLRYSSSTSKDCLNRNKSPGLCRDLESNINFANEAQFL LISEESVADLNRRLEA(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |