Detail information of Os10g0188300_circ_g.2


General Information
CircRNA Name Os10g0188300_circ_g.2
ID in PlantcircBase osa_circ_006363
Alias NA
Organism Oryza sativa
Position chr10: 6107271-6107638  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0188275
Parent gene annotation Hypothetical protein. (Os10t0188275-00)
Parent gene strand -
Alternative splicing Os10g0188300_circ_g.1 Os10g0188300_circ_g.3
Support reads 3
Tissues seed
Exon boundary   No-No
Splicing signals   CA-TG
Number of exons covered Os10t0188300-01:2
Os10t0188275-00:1
Os10t0188300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTAAATGATCATGGTCTTAATTTTGTTATTTTCTTCACACCCAGCTATGTGATAATGTGCATC
CACTACTTACAGTCACAGAGAATACTCCCATGTCTAcaggcattaactcgggcaagggtcccaa
tagtgaagcttatggatccaaatacagggctatcttgtgacatatgtgtcaataaccttttagc
agttgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGCATTAACTCGGGCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTT
GTGACATATGTGTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACG
AATTGATAAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTA
AATGAAACTTACCAAGGAACACTTTCTAGTTATGCGTAAGTTTCCTGTACAACTCATTAAATGT
TATCCCCTTATGTCTAAATGATCATGGTCTTAATTTTGTTATTTTCTTCACACCCAGCTATGTG
ATAATGTGCATCCACTACTTACAGTCACAGAGAATACTCCCATGTCTA
Conservation Information
Conserved circRNAs osi_circ_002765 osi_circ_008833
PMCS 0.356667663
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017