Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0188300_circ_g.3 |
ID in PlantcircBase | osa_circ_006364 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 6107274-6107641 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ie-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circseq_cup |
Parent gene | Os10g0188275 |
Parent gene annotation |
Hypothetical protein. (Os10t0188275-00) |
Parent gene strand | - |
Alternative splicing | Os10g0188300_circ_g.1 Os10g0188300_circ_g.2 |
Support reads | 2/5 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0188300-01:2 Os10t0188275-00:1 Os10t0188300-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002765* osi_circ_008833 |
PMCS | 0.599858929 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6107311-6107638(+) 6107633-6107335(+) 6107343-6107607(-) 6107279-6107490(-) |
Potential amino acid sequence |
MDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAY VIMCIHYLQSQRILPCLQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKR LRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCLQALTRARVPIVKLMDPN TGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMC IHYLQSQRILPCLQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPL AFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCLQ(+) MSTGINSGKGPNSEAYGSKYRAIL*(+) MSQDSPVFGSISFTIGTLARVNACRHGSILCDCK*(-) MPVDMGVFSVTVSSGCTLSHRHN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2016;Chu et al., 2017 |