Detail information of Os10g0188300_circ_g.3


General Information
CircRNA Name Os10g0188300_circ_g.3
ID in PlantcircBase osa_circ_006364
Alias NA
Organism Oryza sativa
Position chr10: 6107274-6107641  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circseq_cup
Parent gene Os10g0188275
Parent gene annotation Hypothetical protein. (Os10t0188275-00)
Parent gene strand -
Alternative splicing Os10g0188300_circ_g.1 Os10g0188300_circ_g.2
Support reads 2/5
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0188300-01:2
Os10t0188275-00:1
Os10t0188300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGATCATGGTCTTAATTTTGTTATTTTCTTCACACCCAGCTATGTGATAATGTGCATCCAC
TACTTACAGTCACAGAGAATACTCCCATGTCTACAGgcattaactcgggcaagggtcccaatag
tgaagcttatggatccaaatacagggctatcttgtgacatatgtgtcaataaccttttagcagt
tgttaaca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 282
Transcript exons: 6107274-6107497,6107584-6107641
GCATTAACTCGGGCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTTGTG
ACATATGTGTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACGAAT
TGATAAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTAAAT
GAAACTTACCAAGGAACACTTTCTAGTTATGCCTATGTGATAATGTGCATCCACTACTTACAGT
CACAGAGAATACTCCCATGTCTACAG

Genomic sequence GCATTAACTCGGGCAAGGGTCCCAATAGTGAAGCTTATGGATCCAAATACAGGGCTATCTTGTG
ACATATGTGTCAATAACCTTTTAGCAGTTGTTAACACAAAACTTCTAAGAGATTATTCACGAAT
TGATAAAAGGTTACGGCCATTAGCATTCATTGTGAAGCATTGGGCTAAATCTCGGTGTGTAAAT
GAAACTTACCAAGGAACACTTTCTAGTTATGCGTAAGTTTCCTGTACAACTCATTAAATGTTAT
CCCCTTATGTCTAAATGATCATGGTCTTAATTTTGTTATTTTCTTCACACCCAGCTATGTGATA
ATGTGCATCCACTACTTACAGTCACAGAGAATACTCCCATGTCTACAG
Conservation Information
Conserved circRNAs osi_circ_002765* osi_circ_008833
PMCS 0.599858929
Functional Information
Coding potential Y
Potential coding position 6107311-6107638(+)
6107633-6107335(+)
6107343-6107607(-)
6107279-6107490(-)
Potential amino acid sequence MDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAY
VIMCIHYLQSQRILPCLQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKR
LRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCLQALTRARVPIVKLMDPN
TGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPLAFIVKHWAKSRCVNETYQGTLSSYAYVIMC
IHYLQSQRILPCLQALTRARVPIVKLMDPNTGLSCDICVNNLLAVVNTKLLRDYSRIDKRLRPL
AFIVKHWAKSRCVNETYQGTLSSYAYVIMCIHYLQSQRILPCLQ(+)
MSTGINSGKGPNSEAYGSKYRAIL*(+)
MSQDSPVFGSISFTIGTLARVNACRHGSILCDCK*(-)
MPVDMGVFSVTVSSGCTLSHRHN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016;Chu et al., 2017