Detail information of Os09g0509300_circ_g.2


General Information
CircRNA Name Os09g0509300_circ_g.2
ID in PlantcircBase osa_circ_039762
Alias NA
Organism Oryza sativa
Position chr9: 19761797-19764166  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os09g0509350
Parent gene annotation Hypothetical protein. (Os09t0509350-00)
Parent gene strand -
Alternative splicing Os09g0509300_circ_g.1 Os09g0509300_circ_g.3 Os09g0509300_circ_g.4 Os09g0509300_circ_g.5 Os09g0509300_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0509300-01:7
Os09t0509350-00:5
Os09t0509300-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAATAAGGAAGGC
ACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAGgatatggcagatatgaggagctgttatg
acaatctgctttctgttgcagcagcgattgcaaatagtgcatatggtatgtttattccccaata
gtacattt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 750
Transcript exons: 19761797-19761869,19762303-19762377,19762649-19762710,19
762793-19762861,19763513-19763541,19763619-19763826,1976
3933-19764166
GATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATA
GTGCATATGAGTTCTCAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACC
AAACAAGGACGGGATTAATGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGG
AAGCTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCACAGTCCCTTC
TCAATGAACTTCAAACTGTAGAGGAAATGAAGCACCAGTGTGATGAAAAAAGAGAGTTGTTCGA
ATTTCTGCTGAATGCACAGAAAGAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCG
TCAGAGCAATTGAAACAAGCTCAGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGT
TAAAGTCATTGAAGCAAGGACAGTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGC
TCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTGTAGAGCCACATGTTAGGCTT
GCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGACGAGGAGGATTACTCTGTGG
ATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTATCCTTTGATTATGGAGAAAA
TAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAGAG

Genomic sequence GATATGGCAGATATGAGGAGCTGTTATGACAATCTGCTTTCTGTTGCAGCAGCGATTGCAAATA
GTGCATATGGTATGTTTATTCCCCAATAGTACATTTTGTCTTTTGAGATCAGTTAAGTATGTGT
TCAATCCTGTAAAAATATTTTTTTGTGTATTGTTGCCATTTCATTTTACACATGCCCTGCAATA
GAACTAACAACTGCCCATTTTCAAATGGATAAAAAACCTCAATGTTTCTTGGTTAATCGAGAAA
GCATTTAAGACGAATATTTCATAGTTTTAATCTAAAGTACAGACTACAGAGGGTGCAGAAACTT
AGGTGTTTTATGAGTTGTTCACCAATTCTTCTCGTGTATAGCCTCAGTTCATTTGCTCTTTTTT
CATATGCTAGCAGCTTTATTAGTTCTTATGCTAATTGTTTATAAGGTTATAGCAGCTAGAAATA
TAGGTGTCTTGACTCTTTTTTGCATATCAATGATCATTTTATCCTTTCATGCATGCAGAGTTCT
CAGAAGCACTGCAGGAAATGGGGACTTGTTTACTTAAAAGAGTCACACCAAACAAGGACGGGAT
TAATGGTAATTATGTTCTGTTGTGATTAATGGTTCTCACTCCCTTGCATAAACACATATCTTGC
AAATTAAGCTCTTCATGAAAACGACAAATTGAGCCAAGGGAAGTTGTTTGTGCCCATTCTCATC
TGCTAGTTGATAGTCACTATCTCAAATTGTGAGGAAAATGAATAAAAATAGGATAATGAGGCCA
TCTTAATGTTATTGATCATTCCATGTAACTTTTGCCTATTATACACTTTGCTGCTTAATGCTTA
CATTGAACAGTATCCCCCAGATAAAGTTTTGCTGTTGCTTGGAAAGGCCCAGTTTGAACTGCGG
AAGCTTGTAGATAGTTATGTAAGTTTTAAGTTGTTTATCGGTGGAGTCACTTATTTACCATAAT
CTTCTACTGCTAATCAAGTCACTATATTTTTCCCAGCGTGTGCATGTTCTTAATACCATCACCA
CTCCATCACAGTCCCTTCTCAATGAACTTCAAACTGTAGAGGTATGTTCTCCCATTCTAATAAT
TTTAGCCATTATGTACAATTTTTTGTGCATATTCCCTCTTATGCTCATGCTCTTTTCTCTGGGG
CCTATTCCTTCCTTGTTCTATGTCGTTTTACTATTTCCCCCCCTGCCCTTTTTACCCTGCTGAT
CATATGTACAATACATGAACTCGCTAAAAACAAAAGTTTGGCTAGTAAACACTGGTCTGTGGCA
TGAAGGAACTCAAATCAACTCTGTAGTCCACTTCATTAATTTGGGTTACATTTTATTATAAAGT
GTATTGCTGATCATTCAAATGTGGTTTTACATAAACTCATTGCAACTCCAATGGATATACATGA
TAATCTGAAATTGTGTGTGTGCGTGTGTGTTTTTTTCCTTTTGCCATTCAGTACAATCCCTGTT
TAAAGGGAGCATTCATTTACTTAAAATATAGTATACATATTTTTTTTGTTTTGTCTACTCCTAT
GCAGATTAACACTTCACAGCTTTGTTTTGTCATGTTCTTCTTGTTGCATTTGTTCTTATTTTTT
GAGTATTTATTATGTATTTGATGCTTGATTACCTAATCGTAGTGAACTGTTCAATAGATAACTA
TGATTTATTCCACTCAGAACTGCAATTAAGCAATAGTGTTTTTTTATTACAGGAAATGAAGCAC
CAGTGTGATGAAAAAAGGTATGCTGACTGTACAGAATGTGGCTTATATTTTTCCCTGTTGACAC
AATTTTTGAGTTTCCAAATGCTTCTTTCAGAGAGTTGTTCGAATTTCTGCTGAATGCACAGAAA
GAAAAGGGAAGATCTAAGAATGCCAAAAGTGACATTGGTGCGTCAGAGCAATTGAAACAAGCTC
AGGACGATTATCAAGAAGAAGCAACTCTTTTTCTATTCCGGTTAAAGTCATTGAAGCAAGGACA
GTTCAGAAGTCTTTTCACACAAGCTGCTCGGCACCATGCTGCTCAGGTGCACATTCTGTCATTT
GGAAATACCCCACTTCCTTTTTTTTTTCTGTGGCAATCTGTACAAAAGCTAATTTTGTGTAAAT
TTGTTTATATTTTACTCCAACCAGCTAAATTTATTCAGAAAGGGGCTCAAATCTCTTGAGGCTG
TAGAGCCACATGTTAGGCTTGCTGCTGAGCAGCAACACATTGACCATCAGTTCAGTGCACTTGA
CGAGGAGGATTACTCTGTGGATGAAGAAAATGAGGATGATTACAATGACAGTCATGAAGATTTA
TCCTTTGATTATGGAGAAAATAAGGAAGGCACAGAAGCTGGTCATGCTTCCAGGAGCCCTACAG
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.353907999
Functional Information
Coding potential Y
Potential coding position 19761801-19764163(+)
19763983-19761809(+)
19761868-19764161(-)
Potential amino acid sequence MADMRSCYDNLLSVAAAIANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKAQFELRK
LVDSYRVHVLNTITTPSQSLLNELQTVEEMKHQCDEKRELFEFLLNAQKEKGRSKNAKSDIGAS
EQLKQAQDDYQEEATLFLFRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGLKSLEAVEPHVRLA
AEQQHIDHQFSALDEEDYSVDEENEDDYNDSHEDLSFDYGENKEGTEAGHASRSPTEDMADMRS
CYDNLLSVAAAIANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKAQFELRKLVDSYR
VHVLNTITTPSQSLLNELQTVEEMKHQCDEKRELFEFLLNAQKEKGRSKNAKSDIGASEQLKQA
QDDYQEEATLFLFRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGLKSLEAVEPHVRLAAEQQHI
DHQFSALDEEDYSVDEENEDDYNDSHEDLSFDYGENKEGTEAGHASRSPTEDMADMRSCYDNLL
SVAAAIANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKAQFELRKLVDSYRVHVLNT
ITTPSQSLLNELQTVEEMKHQCDEKRELFEFLLNAQKEKGRSKNAKSDIGASEQLKQAQDDYQE
EATLFLFRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGLKSLEAVEPHVRLAAEQQHIDHQFSA
LDEEDYSVDEENEDDYNDSHEDLSFDYGENKEGTEAGHASRSPTEDMADMRSCYDNLLSVAAAI
ANSAYEFSEALQEMGTCLLKRVTPNKDGINDKVLLLLGKAQFELRKLVDSYRVHVLNTITTPSQ
SLLNELQTVEEMKHQCDEKRELFEFLLNAQKEKGRSKNAKSDIGASEQLKQAQDDYQEEATLFL
FRLKSLKQGQFRSLFTQAARHHAAQLNLFRKGLKSLEAVEPHVRLAAEQQHIDHQFSALDEEDY
SVDEENEDDYNDSHEDLSFDYGENKEGTEAGHASRSPTE(+)
MLGLLLSSNTLTISSVHLTRRITLWMKKMRMITMTVMKIYPLIMEKIRKAQKLVMLPGALQRIW
QI*(+)
MHYLQSLLQQKADCHNSSSYLPYPL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017