Detail information of BGIOSGA026389_circ_ag.1


General Information
CircRNA Name BGIOSGA026389_circ_ag.1
ID in PlantcircBase osi_circ_017484
Alias Chr07:28816585_28821143(MH63RS2), Chr07:28966183_28970742(ZS97RS2), Chr07:28816585_28821143(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 26716466-26721025  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA026389_circ_ag.2 BGIOSGA026389_circ_igg.1 BGIOSGA026390_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCGTCGACAACATCAAGACGCAGGTCGAGGCCATCTGCAGCCAGACCGTCTCCTGCGCCGAC
ATCCTCGCCGTCGCCGCCCGTGACTCCGTCGTCGCGgctgggagggccatcatggacggttctg
ttggggagaagggactccaccactgcaagcgaggccttggcaaataccgacctccctgcccctt
cctctagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGGGAGGGCCATCATGGACGGTTCTGTTGGGGAGAAGGGACTCCACCACTGCAAGCGAGGCC
TTGGCAAATACCGACCTCCCTGCCCCTTCCTCTAGCCTCGCAGAACTTATCGGCAATTTCTCCA
GAAAGGGACTCGACGCAACCGACATGGTTGCTCTCTCAGGTAATCCGATATGGAGTATTATATA
CGAGTATATATATAGATAGATTAGGATACCATGTATATATGTGTTGCAGATTTTCTGATAAGAT
GAGAGCGCGATTAATTATTTCGCAGGAGCACACACGATCGGGCAGGCGCAGTGCCAGAACTTCA
GGGACAGGATCTACAACGAGACCAACATCGATTCCGCCTTCGCGACGCAACGCCAGGCCAACTG
CCCACGGCCGACGGGCAGCGGCGACAGCAACCTGGCGGCGCTGGACACGACGACGCCCAACGCC
TTCGACAACGCCTACTACAGCAACCTGCTGTCGAACAAGGGGCTCCTGCACTCCGACCAGGTGC
TCTTCAACGGCGGCAGCGCGGACAACACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAG
CAGCGCCTTCACGACGGCCATGGTGAAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGG
CAGATCAGGCTCAGCTGCTCCAAGGTGAACTCCTAATTAAGGAGTAGTATGACGGGATGCGTTC
GTTGCTGGAAGCAAATCGTGTCGACGACGACATAAACGGGCCACACCACATATACCCATATATG
TAGTATAACCACAAGTATAGGTACGGTGGTGTTGTACTAGTACACGTAAAGTATATGGCAGCCA
GCTCGCTCTAGCAATCCATCAAGTGTATGGAGCAGAGCAGCCATGGCATTAGCACCTAGTATAC
CAAAATAAAAGCTCCTCATGCGAAGGCATGCATGGAGGATCAATGAACTGTTACCTTCACGCAC
ATGTCCGTTCACAACTTCTCCAGACTTTTACGGTACATCAAGCTCCCTTTTTTCAAGTAAACAA
CACTAGATATGTTTTTTCATTAGATAGAGAAAAAATAAATACAACCCGCCCCTAGGAGCGAAAA
AAAGAAGAAGAAAAAGCCCGTATTTACAAATTATATACTGATAGGTAATAACTCTCTAAGTCAT
TTTGTTCCTGCCATAGTCCAAGTCTTCTTCCTCTATTTTTGCTAGGAGGGTTATTGTCATGCTC
TCCTTGTTAGAAATTTTGTTGGTTCCTCTCCTTCCGTATCTCCTAGACGACAAGGAGAATTAGG
GAGCGCAATCCCCGCTTTGGCATAAATGTCGTGTTTGGCACACACATTGATAGGGGTGGCTAAC
AAGCCGACTCGGCTCGACTCGTAAAAACTCATTAAGTTAATGAGCTAGCTTGGCTCGACTCATT
AACATAACGAGTTAAAAATGGAACTCGACTCGACTCATTAAAAAGTCCGAGTTGACTCATTAAA
CGTGTTACACCGAAAAACATGGTTTGAAATTCATATGCAGTATAATTTGTGATTCTATGACAAA
AATTATGATTGGCGTGCTATGTATCATGACTCATAAGATTGTACTACAATGTATAATTATGAGT
ATATGACTTTTACACCTGTAAAATATGAACAATTAACTTCTATCTTAGTGTATCATGAGCTTAA
CGAGCTAATCGAGTAACTCACGAGCTAGCTCGAGTTGGCTCGTTAAGTAAACGAGTAAAAGTTC
AAACTCATTAACTACTCGAGTTAAGTCGAGCCGAGCCAAGTTTTACACAAGTTGAGCTAGCTCA
TGAGTTTCGATTTTTTTTCCACCCCTGCACATCGAGCTCTGTTTCGCTATTGATGTTGGTTGAC
ACGGTGAACTTTGACTCTTTGAGTATCAATTATCAAACGGTGTACTCCTACCGTCTTACGTGCC
ATTGCCATCCCGCGCGGCCGCACCGTCCCAAACTCCCACCGACGCAAGCAAGCGCCGCCCTTCC
GCTTGGGCCGTTTTACGCCCGAATGGTCCGAGACCTACCTATTGGGCCTTTGGACCGTGTGACG
CCACATTTCGCTCGCAGTGTCTGTCAGACCAGGGATGGTGGCCCGTGGGCGCTGAGCAGGCCGG
CCTTTCATTTAGTTCGTGTCACCTGTAGGCGGCTAGGCCGGAGGGAAACTAACGTACCCTTTTG
TTGTTATTTATAACTTTATCGACTATAAATTTTGATAAGCAACAAATCAAACATGCCATAATCA
ATTAGGCAAAATTAAGTAATGGAAAAATTAGGAAAAACTAAAGTTATATTCCCTCCTCCTCAAA
AAGAATACAATTTTAGATTTTAAATTTATTCCAACATATAACGTACTCTATAGTATTGCTTTTT
CGTCCAACCACCACTCATTCACCCATATATTACTAACCTAGCTACTCCACCATTCCCAACTGTC
CCTCATTTGATGAGTGGTCGAGTATTTTTCCTATACTATACTAGTTTGTCTTTTAAATATTACA
ATTGTATTTTTCTTTTTTAGAATTGAGGTAGTAAATTTGTAAACAAAGTGAACAGGCCACCAAC
CTACTAGGTGGACCACTGTACACGATAATATTATTTGTGCTATTGTGTTTATTTTAATCTAAGT
TGCAAATCAAGAGAGTATTTTATTTCATTCAAAAAGGAATAATTTGTGAAACACTCAGCAACTG
TATAATATTAGCCGTGAAACTCGGTTAACCATAATTTTTTTTCAAAGGAACTATACGATAATTT
AATTATTTTACTATCCGCATTTTATGGCTTAAGAAACAAGAGTAACATACGGCACATGCAACAA
CCACCATTCTAGCTAGAGCTAGAAATGTCGGCCCAACTTGTGATAGCTAATTACGTTCGATTGG
AAAATCATATCACCAACATGCATGGTTTAATCATGGCAACGCTGATGCGAAAGCTCTCGCAGAT
CTATTATTTTTTCCCTGGAGATTGATCGAAAATGATGGCACAACGGTATGTAATGCTATAACAG
CATATATTGTCTTGTAACACACCGTTTGCACTTAAATTAGACAATTAGTCCGAATGTACATAAG
AAGATGAATTGCGATAGACCATTCTAGCTCGTCACGAGCTGAATAGTTCTCGCACTATTATACC
CGAGATCAATTAGCAGAGTATTAATAAGGTAAAGTTATTTTCATAAACTCTGTACGACGATAGT
GCATACATACCAATCTTTAACAAAGGGACAAATTATCGACGGCATTTGTATGTTCATGTGCTAT
TCTATGGCACGGGTGCTCTTTTTTTTTGGCTTAAGCAACGCGTGATTAATGGTTAACAGATTAA
GGTCAAGCGAAATGGACCGAACTGACCCTACATTGCATGAATAATGCAGAGTTGATGATGTTGG
CCGTAGGCCGTACGTAGAAACTTATGTTGGACACACATGTAAGTACTAGTAGTCTAGTAGCACT
AATAAAGTTAACTAATAAATTATATATGATGTCACTTTAAAAAATACAGATTCAAATTCGATAT
ATTGAAGTTGAACAAATTAAATTCTAGCTAGTTAGTATGCACACATTCACACTCATATTTGTTT
TTGTGTTGTAATTTATAGAAGTTAAAATTCAACTTGCAATTTGTTAGTAAAAACATAACTATTT
AGATGACTAGAAACATATCCTTCTGTTGTAATGTGCCAGGCTCATATAAGTAGAAATATGCTAT
TAGAAAATTAGAGATAGTACTCTGTGCGTGGTGGGAGGAGGGATGAAAAAATGACGAGTTCGAT
TTTAAGGTAGTAGAGATATGTACAAAGCAATAGGATATTCCTGTTGAGATTAAAATCCATTCCC
CTGCCCAGCTCCCCTCGTATGATTAATGTACCTGCATATTTCGTCTCATCTCGGCACCAATCGA
TGGCGTCAAGCCTGTAGCTAAGCTAGCTATATAATATGCAGCGTGGCACCAGCCTCTCTTGCAA
GCCACGGCCAGCGAAAAAGCTTAAAAAAAACTGCAGTTATTTAGGTAGGATTAAGCATACGCGC
ACGGCGCATCATATCGCTCACTCTGCATGGCTTCGGCTTCTTCTGTCAGCTTAATGCTGCTCGT
TGCTGCAGCTATGGCCTCAGCCGCCTCGGCGCAGCTGTCGGCGACGTTCTACGACACGTCGTGC
CCAAACGCATTGTCCACCATCAAGAGCGCAGTGACGGCCGCCGTGAACAGCGAGCCCCGAATGG
GAGCCTCGCTGGTCAGGCTGCACTTCCACGACTGCTTCGTCCAAGCAAGTTTTGATCACCTAAT
CTAATCAGCTGTACAAGTAGTTCTCCTTAGACTGTACTTTGAGACAAGGAAATTAATAACAGAG
GATGTATCTATGGACTTCACTGATGATGCAGGGCTGTGACGCGTCTGTTCTGCTGTCCGGCCAG
GAGCAGAATGCAGGCCCGAACGCTGGGTCACTTCGGGGATTCAACGTCGTCGACAACATCAAGA
CGCAGGTCGAGGCCATCTGCAGCCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCG
TGACTCCGTCGTCGCG
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021