Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G05030_circ_g.4 |
ID in PlantcircBase | ath_circ_019768 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 1394987-1395470 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT3G05030 |
Parent gene annotation |
Sodium/hydrogen exchanger |
Parent gene strand | - |
Alternative splicing | AT3G05030_circ_g.5 |
Support reads | 3 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G05030.3:3 AT3G05030.4:3 AT3G05030.2:3 AT3G05030.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.235145834 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1395026-1394989(-) |
Potential amino acid sequence |
MMLMAYLSYMLAEVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTHLNHEAAFQFLGN FFYLFLLSTGLGVATGLISAYVIKKLYFGRHSTDREVALMMLMAYLSYMLAEVLNQDETPLLYS LVFGEGVVNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKK LYFGRHSTDREVALMMLMAYLSYMLAEVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDL THLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYFGRHSTDREVALMMLMAYLSYML AE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |