Plant Circular RNA Database

Detail information of Os05g0160600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0160600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026730
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 3561814-3563340  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0160600						
					
						Parent gene annotation
						
							Peptidase cysteine/serine, trypsin-like domain containing protei
n. (Os05t0160600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0160600_circ_g.2 Os05g0160600_circ_g.3 						
					
						Support reads
						3
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0160600-01:2

General Information
CircRNA Name	Os05g0160600_circ_g.1
ID in PlantcircBase	osa_circ_026730
Alias	NA
Organism	Oryza sativa
Position	chr5: 3561814-3563340 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0160600
Parent gene annotation	Peptidase cysteine/serine, trypsin-like domain containing protei n. (Os05t0160600-01)
Parent gene strand	-
Alternative splicing	Os05g0160600_circ_g.2 Os05g0160600_circ_g.3
Support reads	3
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0160600-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAGGATAGAGATAGAGAGGACATCCGGATTTGGCAAACGACCGAATGTCATCCCTGCAACATC
GCCACGCTCATCAATCGCAGGTCCTCCAGTGCCACAcaagtccacgatgaaaccatcggtaatg
ccatgttccgattcaatctcctcctggtgtgtaatatccaacgtctcaaaggctatcaagtcca
tatcaaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAAGTCCACGATGAAACCATCGGTAATGCCATGTTCCGATTCAATCTCCTCCTGGTGTGTAATA
TCCAACGTCTCAAAGGCTATCAAGTCCATATCAAGAAAGGGGCGAGCAACACGACTGAAATAAG
CCAAATTCACTAACTTCAAATTTTGACAAGGAATTATTTTGAAGATATTAAAATGTTTGATAAG
AACACATAAAACTACACTGCAAGATATAAAAGAGAGCTACACAGACTATTAAAGACAAAGACAA
TTCGCTAATATTATATGCCACACCTATGTGTCCGTCAAGAATTTGTGGAATTTCTTACAAAGTA
TACCAAGTATAACAACTAAAGTTTAAACATAAGTAGCTAATATTAAAGAGCCAGGCATTGAATA
TTTCTATGCATATAGGACAGTGAAATAGTACACAGGCAGGGGCAGGAGTGGAGACACCGGTATA
CCCACATTTTTTGGGGAAAAAATAGCGAGTAGTATGCACAATGGACCTAGACATTGGATGGTTG
CTTCATTGCCTCAAACAAGCTGGCAGAAATCAAAGCCCAAGAACCTCTGTCATGGGCCATGGCT
ACATGGGAAGTTGGCAGAAGTCGCAGGCTCATAGCGACCAGCGAAGTGGCTAGGACTTCCCTGT
CCAGCCGTCCTAGTTTACATTCTTACTTTTTTTTTTCTCTCAATCTCTCTTATCATACTGATAT
CTTCTCTCTTCTCTCTGGAGGTGACAGAGATTGATTGAAAAATTAAAAACTAAAATTAGTGAGA
GTTTAAATTGAAGGTGTGTTTTCTATTATTTGTAGGGAGAGATCAAGTTGAACCAATCAACTAT
ATGCGAAGGAAAATAGGGAGTTTATGTGCACTAAAACTTTGACTTTTTGCTCTTGAGATCACAT
GGTATTTATAAGCACTGGACATTGATTTTTGCACTTGAGGTTGACGTGGGCACACCCAGGATTT
CGATCCTGGGTCCGCCACTGTACAGAGGTAAAGCCACGATTTGAAGGTTGGGGTGCCAAGATTT
CTCTAGAGATTCATCGTATGACATGGTCAGAGTTTTGGCGAGACACTGATGACGCCGTCACTGC
TACAGCAAGAAGATTTCAGTTTAAGAAAGATATTTTATTGTAAAATAATGTTACACGAGACTTG
TAATATCCATTAAATCCTTAGATTGACATGTGCCACTGCTAATGCGGGGGGCAGGGGGCTATGG
CTTCGCCGCTGATTAAACACTCGTGTTAGGATTGTAATATTATATGTTTTCAATACCAACATAA
ACATATGTCTAAATATTATCTAAATTTTGAAGTTAACCTACCCAACATGCCACAATTTTATAGA
CATCAAAAGAATAGTAGAAACAATACAATAATAAAAGAGATTGTTAATGAACCTGAATCTCCTC
CACATGTCAATGCATGTCTGCAGGATAGAGATAGAGAGGACATCCGGATTTGGCAAACGACCGA
ATGTCATCCCTGCAACATCGCCACGCTCATCAATCGCAGGTCCTCCAGTGCCACA
						
					

			
		

Sequences
Splice junction sequence	GCAGGATAGAGATAGAGAGGACATCCGGATTTGGCAAACGACCGAATGTCATCCCTGCAACATC GCCACGCTCATCAATCGCAGGTCCTCCAGTGCCACAcaagtccacgatgaaaccatcggtaatg ccatgttccgattcaatctcctcctggtgtgtaatatccaacgtctcaaaggctatcaagtcca tatcaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAAGTCCACGATGAAACCATCGGTAATGCCATGTTCCGATTCAATCTCCTCCTGGTGTGTAATA TCCAACGTCTCAAAGGCTATCAAGTCCATATCAAGAAAGGGGCGAGCAACACGACTGAAATAAG CCAAATTCACTAACTTCAAATTTTGACAAGGAATTATTTTGAAGATATTAAAATGTTTGATAAG AACACATAAAACTACACTGCAAGATATAAAAGAGAGCTACACAGACTATTAAAGACAAAGACAA TTCGCTAATATTATATGCCACACCTATGTGTCCGTCAAGAATTTGTGGAATTTCTTACAAAGTA TACCAAGTATAACAACTAAAGTTTAAACATAAGTAGCTAATATTAAAGAGCCAGGCATTGAATA TTTCTATGCATATAGGACAGTGAAATAGTACACAGGCAGGGGCAGGAGTGGAGACACCGGTATA CCCACATTTTTTGGGGAAAAAATAGCGAGTAGTATGCACAATGGACCTAGACATTGGATGGTTG CTTCATTGCCTCAAACAAGCTGGCAGAAATCAAAGCCCAAGAACCTCTGTCATGGGCCATGGCT ACATGGGAAGTTGGCAGAAGTCGCAGGCTCATAGCGACCAGCGAAGTGGCTAGGACTTCCCTGT CCAGCCGTCCTAGTTTACATTCTTACTTTTTTTTTTCTCTCAATCTCTCTTATCATACTGATAT CTTCTCTCTTCTCTCTGGAGGTGACAGAGATTGATTGAAAAATTAAAAACTAAAATTAGTGAGA GTTTAAATTGAAGGTGTGTTTTCTATTATTTGTAGGGAGAGATCAAGTTGAACCAATCAACTAT ATGCGAAGGAAAATAGGGAGTTTATGTGCACTAAAACTTTGACTTTTTGCTCTTGAGATCACAT GGTATTTATAAGCACTGGACATTGATTTTTGCACTTGAGGTTGACGTGGGCACACCCAGGATTT CGATCCTGGGTCCGCCACTGTACAGAGGTAAAGCCACGATTTGAAGGTTGGGGTGCCAAGATTT CTCTAGAGATTCATCGTATGACATGGTCAGAGTTTTGGCGAGACACTGATGACGCCGTCACTGC TACAGCAAGAAGATTTCAGTTTAAGAAAGATATTTTATTGTAAAATAATGTTACACGAGACTTG TAATATCCATTAAATCCTTAGATTGACATGTGCCACTGCTAATGCGGGGGGCAGGGGGCTATGG CTTCGCCGCTGATTAAACACTCGTGTTAGGATTGTAATATTATATGTTTTCAATACCAACATAA ACATATGTCTAAATATTATCTAAATTTTGAAGTTAACCTACCCAACATGCCACAATTTTATAGA CATCAAAAGAATAGTAGAAACAATACAATAATAAAAGAGATTGTTAATGAACCTGAATCTCCTC CACATGTCAATGCATGTCTGCAGGATAGAGATAGAGAGGACATCCGGATTTGGCAAACGACCGA ATGTCATCCCTGCAACATCGCCACGCTCATCAATCGCAGGTCCTCCAGTGCCACA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.098995869

Conservation Information
Conserved circRNAs	NA
PMCS	0.098995869

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							3561845-3563337(+)
3561825-3563337(+)
3563287-3561824(+)
3563294-3561816(-)
3561847-3563291(-)
						
					

						Potential amino acid sequence
						
							MFRFNLLLVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATL
INRRSSSATQVHDETIGNAMFRFNLLLVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDR
EDIRIWQTTECHPCNIATLINRRSSSATQVHDETIGNAMFRFNLLLVCNIQRLKGYQVHIKKGA
SNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATLINRRSSSATQVHDETIGNAMFRFNLL
LVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATLINRRSSS
AT(+)
MKPSVMPCSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVI
PATSPRSSIAGPPVPHKSTMKPSVMPCSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMH
VCRIEIERTSGFGKRPNVIPATSPRSSIAGPPVPHKSTMKPSVMPCSDSISSWCVISNVSKAIK
SISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVIPATSPRSSIAGPPVPHKSTMKPSVMP
CSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVIPATSPRS
SIAGPPVP(+)
MSSLQHRHAHQSQVLQCHTSPR*(+)
MTFGRLPNPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFI
VDLCGTGGPAIDERGDVAGMTFGRLPNPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETL
DITHQEEIESEHGITDGFIVDLCGTGGPAIDERGDVAGMTFGRLPNPDVLSISILQTCIDMWRR
FSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFIVDLCGTGGPAIDERGDVAGMTFGRLP
NPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFIVDL(-)
MALPMVSSWTCVALEDLRLMSVAMLQG*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	3561845-3563337(+) 3561825-3563337(+) 3563287-3561824(+) 3563294-3561816(-) 3561847-3563291(-)
Potential amino acid sequence	MFRFNLLLVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATL INRRSSSATQVHDETIGNAMFRFNLLLVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDR EDIRIWQTTECHPCNIATLINRRSSSATQVHDETIGNAMFRFNLLLVCNIQRLKGYQVHIKKGA SNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATLINRRSSSATQVHDETIGNAMFRFNLL LVCNIQRLKGYQVHIKKGASNTTESPPHVNACLQDRDREDIRIWQTTECHPCNIATLINRRSSS AT(+) MKPSVMPCSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVI PATSPRSSIAGPPVPHKSTMKPSVMPCSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMH VCRIEIERTSGFGKRPNVIPATSPRSSIAGPPVPHKSTMKPSVMPCSDSISSWCVISNVSKAIK SISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVIPATSPRSSIAGPPVPHKSTMKPSVMP CSDSISSWCVISNVSKAIKSISRKGRATRLNLLHMSMHVCRIEIERTSGFGKRPNVIPATSPRS SIAGPPVP(+) MSSLQHRHAHQSQVLQCHTSPR(+) MTFGRLPNPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFI VDLCGTGGPAIDERGDVAGMTFGRLPNPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETL DITHQEEIESEHGITDGFIVDLCGTGGPAIDERGDVAGMTFGRLPNPDVLSISILQTCIDMWRR FSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFIVDLCGTGGPAIDERGDVAGMTFGRLP NPDVLSISILQTCIDMWRRFSRVARPFLDMDLIAFETLDITHQEEIESEHGITDGFIVDL(-) MALPMVSSWTCVALEDLRLMSVAMLQG(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0160600_circ_g.1

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