Plant Circular RNA Database

Detail information of 1_circ_ag.10

			
						 General Information
					
						CircRNA Name
						1_circ_ag.10
					
						ID in PlantcircBase
						ath_circ_010821
					
						Alias
						1:29592906-29595435
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 29592906-29595435  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT1G78660_circ_g.1 AT1G78660_circ_g.2 AT1G78660_circ_g.3 AT1G78660_circ_g.4 AT1G78660_circ_g.5 1_circ_ag.6 AT1G78660_circ_g.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G78670_circ_g.1 AT1G78670_circ_g.2 AT1G78670_circ_g.3 AT1G78670_circ_g.4 AT1G78670_circ_g.5 1_circ_ag.6 AT1G78670_circ_g.7 1_circ_ag.8 AT1G78670_circ_g.9 AT1G78670_circ_g.11 						
					
						Support reads
						3/3/1/5/15
					
						Tissues
						seedling;leaf;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ag.10
ID in PlantcircBase	ath_circ_010821
Alias	1:29592906-29595435
Organism	Arabidpsis thaliana
Position	chr1: 29592906-29595435 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT1G78660_circ_g.1 AT1G78660_circ_g.2 AT1G78660_circ_g.3 AT1G78660_circ_g.4 AT1G78660_circ_g.5 1_circ_ag.6 AT1G78660_circ_g.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G78670_circ_g.1 AT1G78670_circ_g.2 AT1G78670_circ_g.3 AT1G78670_circ_g.4 AT1G78670_circ_g.5 1_circ_ag.6 AT1G78670_circ_g.7 1_circ_ag.8 AT1G78670_circ_g.9 AT1G78670_circ_g.11
Support reads	3/3/1/5/15
Tissues	seedling;leaf;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACCTTATAGACCAAATCTATTAAAACATATATCCAGGTTTATGTTTCAACAGTTCAATCAACA
AAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGaaaaatgcattcgaatggggatcatctg
aaatcccacactctgaggacgcaattcaggtgactcaacatgctgcaaattatctagtcaggtt
agttctct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AAAAATGCATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTC
AACATGCTGCAAATTATCTAGTCAGGTTAGTTCTCTATTGATCAATGTTGGAAAGTATCATTAA
AAGAATTATGTAGTGGTTCAATTTTCTTATTTGAATGTTGGTGCAGTGAAGCCAGAAAGTCAAT
GAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCC
GGATACAAAGGGTACAACAAAAAAAAAGCCACTTCATAATTGGAGTCCAATCCTTACAGTTCTT
GCTGTATGTTAACAAATATTGGATCATGTATGATCAACCTCGTTGGGTTTTTTTTTGCAGGAGC
GGTGACGACGAGGTTTATATTTTCACGTAACAAAGATCCCTTCTCTGTGTGTTTTCGCCAAAAC
ATAGCAATTTATATTAGTTACTAAGAGCAATACAGTGTTTCTCCTTATCCACCATTGATTGTAA
GTTGTAACCAAGGTGTTGAACTATAATTTAAAAAAACACAGTATAGATCACATGAGGCGTGAGG
ACGCAATCACTTGTTCCCATATCTTCCTCTAAAACCTAAATCCTAAAAAATCCCTTTTCAAAGA
TCAAGTTTTAAGGCAAAAAAGCAATCATGATTTTGGCCAGACACAGCGAAAGGACCTTGTCTGT
TTCGAAAAACTCATTTAATCATGTGTTATTAATTTATTATTATCAACAATACAATCGTACTGGG
TGACCAATAATGAGACGCACCCATCAAATTGGGCCCTCCACGGCTCCACCACTGAGAGGGATAC
ACGAAAGTCGTTTTACAAAAACACCTATTAAAAATAAATGTGCATAAAAATCTATTACCACGTG
TACGGTGAAGATTAGGTTCTCGATTTTGTATAAGAAGGTCGAAGTGTGAAGAAATCAAAAACCC
AAAATCGTGAAAGTTCATTTCTCCTCCATTGATCTTTCTTTACTCAGATCTTTCCTCTTCCTCT
GAGATGTGGAGCTACGTTTGGTTACCGTTGGTAGCTCTATCTCTCTTTAAGGATAGCATCATAA
TGGCCAAGGCTGCGACGATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGT
ATGCTCTGCTCCGGATCCGAACCTAAATTACAGACCGGTTATTGGTATTCTGAGCCATCCTGGC
GACGGTGCGTCAGGTCGTTTGAGCAATGCTACAGACGCGTCCTCCATTGCGGCTTCGTATGTGA
AATTAGCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCT
CTTTCAGGTTACTCTCATTTTGCTCAGCCGATTCTGTAATCTGTTCTAGCTTAAGAATTTGATT
GCTTCCAAAATTGATTTACATTTGGAACTGCAGAAGCTAGAATTGGTCAACGGTGTGATACTAA
CTGGTGGTTGGGCTAAAGAAGGATTGTATTTTGAAATCGTCAAGAAAATCTTCAATGTAAGCTC
AACTTTTTTTCCTGGTTGATTTATATAATTCCTATACAATGCTTTTTTTTGTTGATATCTCTAT
GATATCCTCTCAGAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTATATACGCTATT
TGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGGTGACCCTTTCTTCTTGCTTATCAT
ATGTGTTTGCTAAGCTGTAAAGTTAAGCCATACCAGATGTTGTGTAGTTTAACACCATTTGAAA
ATTTCTAATATGTGGCCTTGTAAACAGAACAGAGACATTTTTGAAAAAATGGATGCAAGAAATT
CTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCCAAGGAACCATATTCCAAAGGTAATC
CAGCTTTTCATGAGGATGTGTATATACAGATACCAAAAATATTAGTCAAATATTTCATATGTAA
TTTGTAATGTCTCATAGTGCAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTCT
GGTTATGCAGAATCATCGGGTTAGTAGTATTAGTAACCAGTACTTTGTCTTTACAGTTAATACT
ATGGAATATAGTTTTCACCATTTTTGTTGCTAAACATACTTATACATTCAATTCAATACTCATA
GTTTTGTTGACCTCTGCAGTTAAGCAACTTTTCTTGCCACTTCTTTGATTTCTTGTTCTTGAAT
GGTTATTATCATCGGTTCTCTCTGCTTTCTGATATGAATTGTCCTTATTTCCAGTTTGGTATCT
CACCACAAAGCTTTGAAGGAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGT
TGATGACAACGGCAAGGTATTTTTATGTCCCCAAGAATACCTAAAAAGATTCAATAGCCTGTGA
CCTTATAGACCAAATCTATTAAAACATATATCCAGGTTTATGTTTCAACAGTTCAATCAACAAA
ATATCCAGTGACCGGCTTCCAGTGGCATCCTGAG
						
					

			
		

Sequences
Splice junction sequence	GACCTTATAGACCAAATCTATTAAAACATATATCCAGGTTTATGTTTCAACAGTTCAATCAACA AAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGaaaaatgcattcgaatggggatcatctg aaatcccacactctgaggacgcaattcaggtgactcaacatgctgcaaattatctagtcaggtt agttctct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AAAAATGCATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTC AACATGCTGCAAATTATCTAGTCAGGTTAGTTCTCTATTGATCAATGTTGGAAAGTATCATTAA AAGAATTATGTAGTGGTTCAATTTTCTTATTTGAATGTTGGTGCAGTGAAGCCAGAAAGTCAAT GAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCC GGATACAAAGGGTACAACAAAAAAAAAGCCACTTCATAATTGGAGTCCAATCCTTACAGTTCTT GCTGTATGTTAACAAATATTGGATCATGTATGATCAACCTCGTTGGGTTTTTTTTTGCAGGAGC GGTGACGACGAGGTTTATATTTTCACGTAACAAAGATCCCTTCTCTGTGTGTTTTCGCCAAAAC ATAGCAATTTATATTAGTTACTAAGAGCAATACAGTGTTTCTCCTTATCCACCATTGATTGTAA GTTGTAACCAAGGTGTTGAACTATAATTTAAAAAAACACAGTATAGATCACATGAGGCGTGAGG ACGCAATCACTTGTTCCCATATCTTCCTCTAAAACCTAAATCCTAAAAAATCCCTTTTCAAAGA TCAAGTTTTAAGGCAAAAAAGCAATCATGATTTTGGCCAGACACAGCGAAAGGACCTTGTCTGT TTCGAAAAACTCATTTAATCATGTGTTATTAATTTATTATTATCAACAATACAATCGTACTGGG TGACCAATAATGAGACGCACCCATCAAATTGGGCCCTCCACGGCTCCACCACTGAGAGGGATAC ACGAAAGTCGTTTTACAAAAACACCTATTAAAAATAAATGTGCATAAAAATCTATTACCACGTG TACGGTGAAGATTAGGTTCTCGATTTTGTATAAGAAGGTCGAAGTGTGAAGAAATCAAAAACCC AAAATCGTGAAAGTTCATTTCTCCTCCATTGATCTTTCTTTACTCAGATCTTTCCTCTTCCTCT GAGATGTGGAGCTACGTTTGGTTACCGTTGGTAGCTCTATCTCTCTTTAAGGATAGCATCATAA TGGCCAAGGCTGCGACGATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGT ATGCTCTGCTCCGGATCCGAACCTAAATTACAGACCGGTTATTGGTATTCTGAGCCATCCTGGC GACGGTGCGTCAGGTCGTTTGAGCAATGCTACAGACGCGTCCTCCATTGCGGCTTCGTATGTGA AATTAGCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCT CTTTCAGGTTACTCTCATTTTGCTCAGCCGATTCTGTAATCTGTTCTAGCTTAAGAATTTGATT GCTTCCAAAATTGATTTACATTTGGAACTGCAGAAGCTAGAATTGGTCAACGGTGTGATACTAA CTGGTGGTTGGGCTAAAGAAGGATTGTATTTTGAAATCGTCAAGAAAATCTTCAATGTAAGCTC AACTTTTTTTCCTGGTTGATTTATATAATTCCTATACAATGCTTTTTTTTGTTGATATCTCTAT GATATCCTCTCAGAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTATATACGCTATT TGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGGTGACCCTTTCTTCTTGCTTATCAT ATGTGTTTGCTAAGCTGTAAAGTTAAGCCATACCAGATGTTGTGTAGTTTAACACCATTTGAAA ATTTCTAATATGTGGCCTTGTAAACAGAACAGAGACATTTTTGAAAAAATGGATGCAAGAAATT CTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCCAAGGAACCATATTCCAAAGGTAATC CAGCTTTTCATGAGGATGTGTATATACAGATACCAAAAATATTAGTCAAATATTTCATATGTAA TTTGTAATGTCTCATAGTGCAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTCT GGTTATGCAGAATCATCGGGTTAGTAGTATTAGTAACCAGTACTTTGTCTTTACAGTTAATACT ATGGAATATAGTTTTCACCATTTTTGTTGCTAAACATACTTATACATTCAATTCAATACTCATA GTTTTGTTGACCTCTGCAGTTAAGCAACTTTTCTTGCCACTTCTTTGATTTCTTGTTCTTGAAT GGTTATTATCATCGGTTCTCTCTGCTTTCTGATATGAATTGTCCTTATTTCCAGTTTGGTATCT CACCACAAAGCTTTGAAGGAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGT TGATGACAACGGCAAGGTATTTTTATGTCCCCAAGAATACCTAAAAAGATTCAATAGCCTGTGA CCTTATAGACCAAATCTATTAAAACATATATCCAGGTTTATGTTTCAACAGTTCAATCAACAAA ATATCCAGTGACCGGCTTCCAGTGGCATCCTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.444778999

Conservation Information
Conserved circRNAs	NA
PMCS	0.444778999

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_ag.10

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