Plant Circular RNA Database

Detail information of Os06g0701200_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0701200_circ_g.5
					
						ID in PlantcircBase
						osa_circ_032211
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 29511710-29513798  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0701200						
					
						Parent gene annotation
						
							UTP--glucose-1-phosphate uridylyltransferase family protein. (Os
06t0701200-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0701200_circ_g.1 Os06g0701200_circ_g.2 Os06g0701200_circ_g.3 Os06g0701200_circ_g.4 Os06g0701200_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0701200-01:7

General Information
CircRNA Name	Os06g0701200_circ_g.5
ID in PlantcircBase	osa_circ_032211
Alias	NA
Organism	Oryza sativa
Position	chr6: 29511710-29513798 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0701200
Parent gene annotation	UTP--glucose-1-phosphate uridylyltransferase family protein. (Os 06t0701200-01)
Parent gene strand	-
Alternative splicing	Os06g0701200_circ_g.1 Os06g0701200_circ_g.2 Os06g0701200_circ_g.3 Os06g0701200_circ_g.4 Os06g0701200_circ_g.6
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0701200-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGAAACAAAGTT
GTCATCACCAAAGGTCAATACTTCCCCTGAAGGAACcatcgacatgagtaagttttgttattcc
tccaatggcttcttttgccttccgtggaactgcaagagaattaacattataacctttggtggcg
ctgacacc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 685
Transcript exons: 29511710-29511827,29511948-29512008,29512158-29512222,29
512333-29512404,29512516-29512643,29512938-29513037,2951
3658-29513798
CATCGACATGAGTAAGTTTTGTTATTCCTCCAATGGCTTCTTTTGCCTTCCGTGGAACTGCAAG
AGAATTAACATTATAACCTTTGGTGGCGCTGACACCTAATGCTGATGGTATTGCATTGAAGAGC
AATCCATTTGTGTCCTGGAAAAAGAGAACCCATTTCCGCCCTGTGCTCTTCCATTGCTCAAGCA
AGCCGCTTGAATAAAGAAGAGCGTGGACATCTCCATGCCCATGTGGCTTTGTCTGGATTTTGTA
CTTGTCATTTGGGTCTAATGCAAGCCTTGCATCATTATCAGCTAAACATGCCACTTTTTCCTGC
TTAAGAATGTGCACTTGTGATGGTTCCATTCCAAAATAGGAGTTTGACTCCAAAAGTTTGACGG
TTAGTGCATTTGTGTCATCAGAAGTCATAATAACAAATGGGATCTTTGTATTGCATTCACCCTC
TACCAATTTGCAGCTCGCCTCCTGCAAAGCTAGAATAGATTCTATGTAATGTTGAAGAAAGCAT
TTTCCAGTAGTTGTTTCCCTGGGAAGTGCAACCTTAATTCCTTTGTAACCAAGTCTTTCACCAA
GCCCACCAGCTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGA
AACAAAGTTGTCATCACCAAAGGTCAATACTTCCCCTGAAGGAAC
						
					

						Genomic sequence
						
							CATCGACATGAGTAAGTTTTGTTATTCCTCCAATGGCTTCTTTTGCCTTCCGTGGAACTGCAAG
AGAATTAACATTATAACCTTTGGTGGCGCTGACACCTAATGCTGATGGTATTGCCTGTAAATAC
AGTGGGAAGATCTATATCAATTTAACAGATACCATATGTCAACTCATTCCAGCATTTGTCTAAA
AAACAAGCTCTCAATTGTAAGACAGTAGGGAAGCAAGAGTACAAACATTGAAGAGCAATCCATT
TGTGTCCTGGAAAAAGAGAACCCATTTCCGCCCTGTGCTCTTCCTACAAAAAAGTAGTATAAAA
CACACAAGATCGACATGCATTGATTTGAACTTAGCATAATTATTTTAGCAATTTAATTCATGTA
CATTACTTCTAATCTTCTTCAAACTGGCAAAAAGCGACTAACTACGAATGTTGAATTAATTTAC
CATTGCTCAAGCAAGCCGCTTGAATAAAGAAGAGCGTGGACATCTCCATGCCCATGTGGCTTTG
TCTGTCAAATCACAAAAATGAAATTAAGAAACCTCCAGGAAAAGAAAAGGTAACAATAGGTGAC
ATATATTTAAATCTTAATTATAGAGATCTCGTATCAAAATTAGCAACCTGGATTTTGTACTTGT
CATTTGGGTCTAATGCAAGCCTTGCATCATTATCAGCTAAACATGCCACTTTTTCCTGAAAAAA
TAATAAGCATTAGCATTAAATAGCGAAACTAACTTTTGTGCCTACTGAAGAATATATTTTAACT
AAGAAATACATGGAAGAGATAGCAAGATAGAAGACTACCTGCTTAAGAATGTGCACTTGTGATG
GTTCCATTCCAAAATAGGAGTTTGACTCCAAAAGTTTGACGGTTAGTGCATTTGTGTCATCAGA
AGTCATAATAACAAATGGGATCTTTGTATTGCATTCACCTGCAAGCTCAAGGAACAAAATCAAT
CAGAACCAAATCAACATCTGAATCGTCTTTGAGTCTTTCCATCCAAAGAACGTCTAAATAGTGG
GAAACACATATCGAGCAACCATTCACAACAACCAACAGCAGTTCAAAGGGAAATAACTAAAGGC
TAACACAGGCAATACCTACCAGAAATACCACAGCGATATTAGAAAGAAAAATACTTTGATAAGA
TTAGTTTATCAAAACAAGAAGTATCATCCCTGCTGTTAGTCATGAGTTCATTGCACATATAATG
TAGTCCACATACCCTCTACCAATTTGCAGCTCGCCTCCTGCAAAGCTAGAATAGATTCTATGTA
ATGTTGAAGAAAGCATTTTCCAGTAGTTGTTTCCCTGGGAAGTGCAACCTGCGCAATGATATTA
CCCATGAATGCTTGATATCAAGGTGAATTTAGCACAACAATATAATGTCCAGAGGGAAATTACA
TGATCCCATTTCTGGATTTGCTAACAATCATATCAAAATAAATGCCTGATGGACAGTCTAGTTT
GTAAGCACACAAGATCAACTTGACTACCTGTACACTTTGACTTGCTAAAACATTTGCTATCCTA
TCCAATTTCCAAGCTCACTGAAATTTGCTGGAACTGTGGAGATGTAATCACTTTCTTCCTTTTT
TTCATTAACATCTTAGTTTTCATATACGAATTGTGGTGCATGATGTTGTGATAGGACGATTCAG
CAATTAATGTGAATATATCTTAGCAAAATAAGAGGCATGGAGGTGAAATGTTTCAACCAAACAG
CACAATCATACTACATCCTCATGACTGCAAAACACTAGTTCTACTACCACAGCATCTACTTTGG
AATTGTAATAAATATATGCCCTTTTGTTTGCTAGAACTTGGGTCGGATATCACAACATGTCATA
ACTGGGAATCTTTAACTGGAGTTACCAGTCAAGAAGCTAGCTATTTTCATGCTTTGTTGCAAGA
ATGGTATTTCCAACTGGGGTCACATTACCTTAATTCCTTTGTAACCAAGTCTTTCACCAAGCCC
ACCAGCTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGAAACA
AAGTTGTCATCACCAAAGGTCAATACTTCCCCTGAAGGAAC
						
					

			
		

Sequences
Splice junction sequence	CTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGAAACAAAGTT GTCATCACCAAAGGTCAATACTTCCCCTGAAGGAACcatcgacatgagtaagttttgttattcc tccaatggcttcttttgccttccgtggaactgcaagagaattaacattataacctttggtggcg ctgacacc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 685 Transcript exons: 29511710-29511827,29511948-29512008,29512158-29512222,29 512333-29512404,29512516-29512643,29512938-29513037,2951 3658-29513798 CATCGACATGAGTAAGTTTTGTTATTCCTCCAATGGCTTCTTTTGCCTTCCGTGGAACTGCAAG AGAATTAACATTATAACCTTTGGTGGCGCTGACACCTAATGCTGATGGTATTGCATTGAAGAGC AATCCATTTGTGTCCTGGAAAAAGAGAACCCATTTCCGCCCTGTGCTCTTCCATTGCTCAAGCA AGCCGCTTGAATAAAGAAGAGCGTGGACATCTCCATGCCCATGTGGCTTTGTCTGGATTTTGTA CTTGTCATTTGGGTCTAATGCAAGCCTTGCATCATTATCAGCTAAACATGCCACTTTTTCCTGC TTAAGAATGTGCACTTGTGATGGTTCCATTCCAAAATAGGAGTTTGACTCCAAAAGTTTGACGG TTAGTGCATTTGTGTCATCAGAAGTCATAATAACAAATGGGATCTTTGTATTGCATTCACCCTC TACCAATTTGCAGCTCGCCTCCTGCAAAGCTAGAATAGATTCTATGTAATGTTGAAGAAAGCAT TTTCCAGTAGTTGTTTCCCTGGGAAGTGCAACCTTAATTCCTTTGTAACCAAGTCTTTCACCAA GCCCACCAGCTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGA AACAAAGTTGTCATCACCAAAGGTCAATACTTCCCCTGAAGGAAC
Genomic sequence	CATCGACATGAGTAAGTTTTGTTATTCCTCCAATGGCTTCTTTTGCCTTCCGTGGAACTGCAAG AGAATTAACATTATAACCTTTGGTGGCGCTGACACCTAATGCTGATGGTATTGCCTGTAAATAC AGTGGGAAGATCTATATCAATTTAACAGATACCATATGTCAACTCATTCCAGCATTTGTCTAAA AAACAAGCTCTCAATTGTAAGACAGTAGGGAAGCAAGAGTACAAACATTGAAGAGCAATCCATT TGTGTCCTGGAAAAAGAGAACCCATTTCCGCCCTGTGCTCTTCCTACAAAAAAGTAGTATAAAA CACACAAGATCGACATGCATTGATTTGAACTTAGCATAATTATTTTAGCAATTTAATTCATGTA CATTACTTCTAATCTTCTTCAAACTGGCAAAAAGCGACTAACTACGAATGTTGAATTAATTTAC CATTGCTCAAGCAAGCCGCTTGAATAAAGAAGAGCGTGGACATCTCCATGCCCATGTGGCTTTG TCTGTCAAATCACAAAAATGAAATTAAGAAACCTCCAGGAAAAGAAAAGGTAACAATAGGTGAC ATATATTTAAATCTTAATTATAGAGATCTCGTATCAAAATTAGCAACCTGGATTTTGTACTTGT CATTTGGGTCTAATGCAAGCCTTGCATCATTATCAGCTAAACATGCCACTTTTTCCTGAAAAAA TAATAAGCATTAGCATTAAATAGCGAAACTAACTTTTGTGCCTACTGAAGAATATATTTTAACT AAGAAATACATGGAAGAGATAGCAAGATAGAAGACTACCTGCTTAAGAATGTGCACTTGTGATG GTTCCATTCCAAAATAGGAGTTTGACTCCAAAAGTTTGACGGTTAGTGCATTTGTGTCATCAGA AGTCATAATAACAAATGGGATCTTTGTATTGCATTCACCTGCAAGCTCAAGGAACAAAATCAAT CAGAACCAAATCAACATCTGAATCGTCTTTGAGTCTTTCCATCCAAAGAACGTCTAAATAGTGG GAAACACATATCGAGCAACCATTCACAACAACCAACAGCAGTTCAAAGGGAAATAACTAAAGGC TAACACAGGCAATACCTACCAGAAATACCACAGCGATATTAGAAAGAAAAATACTTTGATAAGA TTAGTTTATCAAAACAAGAAGTATCATCCCTGCTGTTAGTCATGAGTTCATTGCACATATAATG TAGTCCACATACCCTCTACCAATTTGCAGCTCGCCTCCTGCAAAGCTAGAATAGATTCTATGTA ATGTTGAAGAAAGCATTTTCCAGTAGTTGTTTCCCTGGGAAGTGCAACCTGCGCAATGATATTA CCCATGAATGCTTGATATCAAGGTGAATTTAGCACAACAATATAATGTCCAGAGGGAAATTACA TGATCCCATTTCTGGATTTGCTAACAATCATATCAAAATAAATGCCTGATGGACAGTCTAGTTT GTAAGCACACAAGATCAACTTGACTACCTGTACACTTTGACTTGCTAAAACATTTGCTATCCTA TCCAATTTCCAAGCTCACTGAAATTTGCTGGAACTGTGGAGATGTAATCACTTTCTTCCTTTTT TTCATTAACATCTTAGTTTTCATATACGAATTGTGGTGCATGATGTTGTGATAGGACGATTCAG CAATTAATGTGAATATATCTTAGCAAAATAAGAGGCATGGAGGTGAAATGTTTCAACCAAACAG CACAATCATACTACATCCTCATGACTGCAAAACACTAGTTCTACTACCACAGCATCTACTTTGG AATTGTAATAAATATATGCCCTTTTGTTTGCTAGAACTTGGGTCGGATATCACAACATGTCATA ACTGGGAATCTTTAACTGGAGTTACCAGTCAAGAAGCTAGCTATTTTCATGCTTTGTTGCAAGA ATGGTATTTCCAACTGGGGTCACATTACCTTAATTCCTTTGTAACCAAGTCTTTCACCAAGCCC ACCAGCTACAAGAACAAATGCTGCATGGCGGGCTTCTTTTACCCCAGCTTCTTCAAGCGAAACA AAGTTGTCATCACCAAAGGTCAATACTTCCCCTGAAGGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.232548723

Conservation Information
Conserved circRNAs	NA
PMCS	0.232548723

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							29513712-29511717(+)
29512613-29513769(-)
29511720-29513769(-)
						
						Potential amino acid sequence
						
							MLHGGLLLPQLLQAKQSCHHQRSILPLKEPST*(+)
MTSDDTNALTVKLLESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQTKPHGHGD
VHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIG
GITKLTHVDGSFRGSIDLW*(-)
MSMVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGLGERLGYKGIKVALPRETTTGKCFL
QHYIESILALQEASCKLVEGECNTKIPFVIMTSDDTNALTVKLLESNSYFGMEPSQVHILKQEK
VACLADNDARLALDPNDKYKIQTKPHGHGDVHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFN
AIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKLTHVDGSFRGSIDLW*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	29513712-29511717(+) 29512613-29513769(-) 29511720-29513769(-)
Potential amino acid sequence	MLHGGLLLPQLLQAKQSCHHQRSILPLKEPST(+) MTSDDTNALTVKLLESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQTKPHGHGD VHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIG GITKLTHVDGSFRGSIDLW(-) MSMVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGLGERLGYKGIKVALPRETTTGKCFL QHYIESILALQEASCKLVEGECNTKIPFVIMTSDDTNALTVKLLESNSYFGMEPSQVHILKQEK VACLADNDARLALDPNDKYKIQTKPHGHGDVHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFN AIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKLTHVDGSFRGSIDLW*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0701200_circ_g.5

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