Detail information of Os02g0103800_circ_g.5


General Information
CircRNA Name Os02g0103800_circ_g.5
ID in PlantcircBase osa_circ_040796
Alias NA
Organism Oryza sativa
Position chr2: 184090-184217  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os02g0103850
Parent gene annotation Hypothetical protein. (Os02t0103850-00)
Parent gene strand +
Alternative splicing Os02g0103800_circ_g.1 Os02g0103800_circ_g.2 Os02g0103800_circ_g.3 Os02g0103800_circ_g.4 Os02g0103800_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os02t0103800-03:1
Os02t0103800-02:2
Os02t0103800-01:1
Os02t0103800-03:1
Os02t0103850-00:1
Os02t0103800-02:2
Os02t0103800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCCCGGCTCACCGCGAAGTCCAGCCGGAACCTCTCCGGCGCGATCTCCTTCATCCGCTCGAA
agctcgtccttgtactccgccatccgcgtctggatgtacatcttctcccccgccgcgttcgtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 128
Transcript exons: 184090-184217
AGCTCGTCCTTGTACTCCGCCATCCGCGTCTGGATGTACATCTTCTCCCCCGCCGCGTTCGTCT
GCTCCCGGCTCACCGCGAAGTCCAGCCGGAACCTCTCCGGCGCGATCTCCTTCATCCGCTCGAA

Genomic sequence AGCTCGTCCTTGTACTCCGCCATCCGCGTCTGGATGTACATCTTCTCCCCCGCCGCGTTCGTCT
GCTCCCGGCTCACCGCGAAGTCCAGCCGGAACCTCTCCGGCGCGATCTCCTTCATCCGCTCGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.33138112
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study