Detail information of Os04g0349500_circ_g.5


General Information
CircRNA Name Os04g0349500_circ_g.5
ID in PlantcircBase osa_circ_023488
Alias NA
Organism Oryza sativa
Position chr4: 16646401-16646441  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os04g0349500
Parent gene annotation Similar to 40S ribosomal protein S8. (Os04t0349500-01)
Parent gene strand -
Alternative splicing Os04g0349500_circ_g.2 Os04g0349500_circ_g.3 Os04g0349500_circ_g.4 Os04g0349500_circ_g.6 Os04g0349500_circ_g.7 Os04g0349500_circ_g.8
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0349500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCGTGGCAGCCTCACCCTatggttgctcttttttgcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGTTGCTCTTTTTTGCTTCCTCCGTGGCAGCCTCACCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.233074649
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017