Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d039138_circ_g.1 |
ID in PlantcircBase | zma_circ_002422 |
Alias | circ1128 |
Organism | Zea mays |
Position | chr6: 170948895-170952374 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d039138 |
Parent gene annotation |
GBF-interacting protein 1 |
Parent gene strand | + |
Alternative splicing | Zm00001d039138_circ_g.2 |
Support reads | 3 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d039138_T007:6 Zm00001d039138_T013:6 Zm00001d039138_T005:6 Zm00001d039138_T014:6 Zm00001d039138_T003:6 Zm00001d039138_T006:6 Zm00001d039138_T009:6 Zm00001d039138_T010:6 Zm00001d039138_T001:6 Zm00001d039138_T016:6 Zm00001d039138_T012:6 Zm00001d039138_T015:5 Zm00001d039138_T004:4 Zm00001d039138_T008:4 Zm00001d039138_T002:6 Zm00001d039138_T011:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.093665386 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |