Detail information of Os04g0466100_circ_g.1


General Information
CircRNA Name Os04g0466100_circ_g.1
ID in PlantcircBase osa_circ_024119
Alias NA
Organism Oryza sativa
Position chr4: 23308708-23309008  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0466100
Parent gene annotation Similar to Cell division protein FtsH-like protein. (Os04t046610
0-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0466100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGCGACACAGAGCAGGGTCCAGTGCTTTAGGCCTATTAGTAGCAGCCATGACAATAACTTT
CATGTCCGAGTCAAAACCATCCATCTCAGTAAGCAGcccttcgagcagctagtaacgcagcctc
attcacaatgtttgctagatccgcaccaaccaatcctggtgttaaactagcaaccagatcacaa
attatttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 301
Transcript exons: 23308708-23309008
CCCTTCGAGCAGCTAGTAACGCAGCCTCATTCACAATGTTTGCTAGATCCGCACCAACCAATCC
TGGTGTTAAACTAGCAACCAGATCACAAATTATTTCAGGATCCTCTTCCAAAGGAACGTCCCTT
AAATGAACAGCCAAAATATTCCTTCGCCCCTCCAAATCAGGCACACCAACCAAAACTTTTCTTG
AGAACCGACCAGGGCGACACAGAGCAGGGTCCAGTGCTTTAGGCCTATTAGTAGCAGCCATGAC
AATAACTTTCATGTCCGAGTCAAAACCATCCATCTCAGTAAGCAG

Genomic sequence CCCTTCGAGCAGCTAGTAACGCAGCCTCATTCACAATGTTTGCTAGATCCGCACCAACCAATCC
TGGTGTTAAACTAGCAACCAGATCACAAATTATTTCAGGATCCTCTTCCAAAGGAACGTCCCTT
AAATGAACAGCCAAAATATTCCTTCGCCCCTCCAAATCAGGCACACCAACCAAAACTTTTCTTG
AGAACCGACCAGGGCGACACAGAGCAGGGTCCAGTGCTTTAGGCCTATTAGTAGCAGCCATGAC
AATAACTTTCATGTCCGAGTCAAAACCATCCATCTCAGTAAGCAG
Conservation Information
Conserved circRNAs osi_circ_005541* osi_circ_014442
PMCS 0.412618383
Functional Information
Coding potential Y
Potential coding position 23308960-23308720(+)
23308998-23309000(-)
Potential amino acid sequence MTITFMSESKPSISVSSPSSS*(+)
MDGFDSDMKVIVMAATNRPKALDPALCRPGRFSRKVLVGVPDLEGRRNILAVHLRDVPLEEDPE
IICDLVASLTPGLVGADLANIVNEAALLAARRAAY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017