Detail information of BGIOSGA014928_circ_g.2


General Information
CircRNA Name BGIOSGA014928_circ_g.2
ID in PlantcircBase osi_circ_005541
Alias 4:21717811|21718111
Organism Oryza sativa ssp. indica
Position chr4: 21717811-21718111  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014928
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014928_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014928-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGCGACACAGAGCAGGGTCCAGTGCTTTAGGCCTATTAGTAGCAGCCATGACAATAACTTT
CATGTCCGAGTCAAAACCATCCATCTCAGTAAGCAGcccttcgagcagctagtaacgcagcctc
attcacaatgtttgctagatccgcaccaaccaatcctggtgttaaactagcaaccagatcacaa
attatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCTTCGAGCAGCTAGTAACGCAGCCTCATTCACAATGTTTGCTAGATCCGCACCAACCAATCC
TGGTGTTAAACTAGCAACCAGATCACAAATTATTTCAGGATCCTCTTCCAAAGGAACGTCCCTT
AAATGAACAGCCAAAATATTCCTTCGCCCCTCCAAATCAGGCACACCAACCAAAACTTTTCTTG
AGAACCGACCAGGGCGACACAGAGCAGGGTCCAGTGCTTTAGGCCTATTAGTAGCAGCCATGAC
AATAACTTTCATGTCCGAGTCAAAACCATCCATCTCAGTAAGCAG
Conservation Information
Conserved circRNAs osa_circ_024119*
PMCS
Functional Information
Coding potential Y
Potential coding position 21718101-21718103(-)
21718063-21717823(+)
Potential amino acid sequence MDGFDSDMKVIVMAATNRPKALDPALCRPGRFSRKVLVGVPDLEGRRNILAVHLRDVPLEEDPE
IICDLVASLTPGLVGADLANIVNEAALLAARRAAY*(-)
MTITFMSESKPSISVSSPSSS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021