Plant Circular RNA Database

Detail information of Csa4G008220_circ_g.3

			
						 General Information
					
						CircRNA Name
						Csa4G008220_circ_g.3
					
						ID in PlantcircBase
						csa_circ_002287
					
						Alias
						Chr4:1344116_1347120
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr4: 1344116-1347120  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa4G008220						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							Csa4G008220_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa4G008220.1:7

General Information
CircRNA Name	Csa4G008220_circ_g.3
ID in PlantcircBase	csa_circ_002287
Alias	Chr4:1344116_1347120
Organism	Cucumis sativus
Position	chrChr4: 1344116-1347120 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa4G008220
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	Csa4G008220_circ_g.4
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa4G008220.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTGAAGCTTGTACAAGTCTGATAAACAGAATATGCATTTTATCAGCAAACCTAGTCACTCTGAT
CCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAGgtgttgacctatgcccagcaatcgagag
aaaggtccaactatgagcaggcagctcttagtgaacggatgcaagagtacaagaggcaggttga
tcgggaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1239
Transcript exons: 1344116-1344331,1344512-1344643,1344749-1344973,1345089-
1345175,1345269-1345607,1346770-1346915,1347027-1347120
GTGTTGACCTATGCCCAGCAATCGAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAGTGAAC
GGATGCAAGAGTACAAGAGGCAGGTTGATCGGGAGAGTAGGTGGTCGTCAAATGGTTCTAATGG
TTCTCCCAATGGAGATGGTATTCAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGAAGTC
ATGCAATCTGCTGCAAAAGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTT
CAAACTTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGGGGATTACTGTATTA
TTATCGCAAGCAGTGTAACAAATCATCTGCGTCTCTATCACAACTAGCAGGTCAGAGGAATAGT
TCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCTTTCTTCCCATTATCATGGTGGGGTGCATG
ATGAGAAATCTGTAGCTCATCATACAGTAAACCTGCTCACTTCAACAATCAAAGTTGATGCAGA
CCAGTCTGATCTTAGGTTCTGCTTTCGTATCATATCACCAACCAAAAGTTATACTTTGCAGGCA
GAGAGCGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTTATTGCTTCATTACTAA
GTTCTCAGGCTCCAGAGAGGTGTCTTGCGGGTAGTCCCATGGGAAGTGGTCATCACAGATCTAC
TAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTGCGGTTGAAGAATACACATCG
GAAAGAAGCCTTAGTTCCTCTCATATGGACCGCCCTTCAAGAAACTTGCAACAGCAACGATCAG
TGATGAAAATTGAGAAGCCAATAGACATACTTCGTAGAGTATGCGGGAACGATAAGTGTGCAGA
TTGTGGTGCTCCTGAACCTGACTGGGCATCTTTGAATCTTGGTGTTCTTGTTTGTATTGAATGT
TCTGGTGTTCATCGTAATCTTGGTGTTCACATATCAAAGGTGAGATCCCTTACATTGGATGTCA
AAGTGTGGGAACCTTCAGTTATCAGTTTGTTTCAATCCCTTGGAAATACCTTTGCGAACTCGGT
TTGGGAGGAGATGCTGCAATCTAGAAGTGCCTTTCAGGTCGATCTTGTTACGGCAGGCTTGTAC
AAGTCTGATAAACAGAATATGCATTTTATCAGCAAACCTAGTCACTCTGATCCAATATCAGTGA
AGGAGAAGTTCATTCATGCAAAG
						
					

						Genomic sequence
						
							GTGTTGACCTATGCCCAGCAATCGAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAGTGAAC
GGATGCAAGAGTACAAGAGGCAGGTTGATCGGGAGAGTAGGTGGTCGTCAAATGGTTCTAATGG
TTCTCCCAATGGAGATGGTATTCAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGAAGTC
ATGCAATCTGCTGCAAAAGGAAAGGTCAGGAAATATTTCATTTTTGTGTCCATTTGCATTATAT
CACCGATTTCCCAAGGTGCAAGCAGTGTAACAAATATTTCATCTTTGGACATGAGCATTTATCT
ATCTTTTTTGGGTGACTAATTTTTCTTTCCATTTTTGCCGCATGGCTTTAATTTTTTCTGTTCA
ACTATAATTTAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTTCAAACTTGAGAG
GTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGGGGATTACTGTATTATTATCGCAAGCA
GTGTAACAAATCATCTGTGAGTAATTTATTCATGTTACCTTGTCACGAGCAGGAAGATTTTCCC
CCTCCCTCTGTTAAATGGTAGTGTCTGAATTTGCTTCATGTGTATGTGGGTTTGTAGGCGTCTC
TATCACAACTAGCAGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCT
TTCTTCCCATTATCATGGTGGGGTGCATGATGAGAAATCTGTAGCTCATCATACAGTAAACCTG
CTCACTTCAACAATCAAAGTTGATGCAGACCAGTCTGATCTTAGGTTCTGCTTTCGTATCATAT
CACCAACCAAAAGTTATACTTTGCAGGTTTGATTTAGGGGCTAGTTTGAGCTGTAAATTGATGC
TTCACTTCCAGAATTGTTGTATGAAGATTCTATAATTTTAAGGTTCCCTATAAATCTATTTCTG
CATGTTAGTGTAGGCAGAGAGCGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTT
ATTGCTTCATTACTAAGTTCTCAGGCTCCAGAGAGGGTATTCACTCTGCCTTTCTTTTTGCTTG
ACTTTTGAGGTCTTCAAATATTAATGTTTGAAGTTATTTGTGCAACTTTTTTATCTGCGTATCA
GTGTCTTGCGGGTAGTCCCATGGGAAGTGGTCATCACAGATCTACTAGTGAGAGTAGTTCTTTT
GAAAGTTCTGACTTTGATCAGACTGCGGTTGAAGAATACACATCGGAAAGAAGCCTTAGTTCCT
CTCATATGGACCGCCCTTCAAGAAACTTGCAACAGCAACGATCAGTGATGAAAATTGAGAAGCC
AATAGACATACTTCGTAGAGTATGCGGGAACGATAAGTGTGCAGATTGTGGTGCTCCTGAACCT
GACTGGGCATCTTTGAATCTTGGTGTTCTTGTTTGTATTGAATGTTCTGGTGTTCATCGTAATC
TTGGTGTTCACATATCAAAGGTATCTTGAACTTGCTTTTCATGCACTTTATCCAGTAGTGGTGT
ATCCTGTGGGTGATCTTCTACCATTAAGAAAGCATCATGCTATTATAAAAGGGCAGTGTATGCA
TGCGATATATGTAATTATCTTGTAATGATTTATTAAAAATGTGAGTTAATTCCATGACAATGTT
CTGAGTGGCATGAAAGCAGTATCCAAATGGCTGTTGGGTAATCTGACAAGCCTAGCATGATAAA
ACTTTTGTGGAACTAACCATGTAGTTGAAGAAATTCACTCAGTATTCGTGTTGTAGTTCATGTA
ACCAGGAGCAAATAAAACAATCATTTGTTTCCTGATCTTTTGTCGTGTTCATAATTCTGTTTGA
GTAGATGAGGTGCTAAAAAACTTGGCAGTTCCATATGTGAAATAAAGGGTTCCTAGTGGAAAGT
AATGTGGGAAGAACTCATATAAATGACTGGTGCTGATGTTGCCTAAGTGGTCTTTAGGAGAATC
CTCCGAGAACCAAGATTGTTAATCTTTTTATTAGAATGAATAATGTGTTTCATATGAGAGGGGA
ATACACCTATTTATAGAGTTATTACGAGTGGGGATGGAAAGGAAATTATTTAGAATATTAATTA
GTTATCGAGTTAACCCCTCCTTCTTACATCAGCTGTTTTACGTCAGCCCCTGTTTTTTTGTTAA
TCTCATTGTGGTTTTCCTTTGTGAAATGGTGTTGATTATTGTTAACGCTTCATTGTAAATTTGT
TGTACTTCTTTACCGTTAAAGGTCAATGTGTGCAGCCATAAGTAAGACAATTTTACATCACAAT
AGTTTGATTACTAGCTTTCATATAATTACCTTATAATAGGGCCTTTGGTATTCATTTCACCACA
TCAATGATATGCTTTTGTTCCATTTAAACAGAATAGTTTTATAACCTTTATATGATATTGCATT
TATTGTCCTGTTTACAGGAAGTATGTGAATGTGTTCCTTGTTGCTTTTTAAAAGTGAAAAAAAT
TAACCTAGAAATTAATTGGGTTAGTACACAAGATTGCTAAAAGTAAAGCTTTTCACTCGGTGGT
GCCCTTGGTTTTTGATAAAGATATTTCTGTGGTTAGTAATTCTTGTTGCTTCCTGCATTCTAAA
TGCTTACGGCTTACCTCTGCAATTGTGTAGGTGAGATCCCTTACATTGGATGTCAAAGTGTGGG
AACCTTCAGTTATCAGTTTGTTTCAATCCCTTGGAAATACCTTTGCGAACTCGGTTTGGGAGGA
GATGCTGCAATCTAGAAGTGCCTTTCAGGTCGATCTTGTTACGGCAGGGTAAATGAACTTCACT
ATTCAGTCAGTCATAAGTTTTTCAAGACAATGTTCAATATCCACTTTCATTTTATTTGGTTTTG
CTAACATTCACCTATTATTTTTGTGGTGAAGCTTGTACAAGTCTGATAAACAGAATATGCATTT
TATCAGCAAACCTAGTCACTCTGATCCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAG
						
					

			
		

Sequences
Splice junction sequence	GTGAAGCTTGTACAAGTCTGATAAACAGAATATGCATTTTATCAGCAAACCTAGTCACTCTGAT CCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAGgtgttgacctatgcccagcaatcgagag aaaggtccaactatgagcaggcagctcttagtgaacggatgcaagagtacaagaggcaggttga tcgggaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1239 Transcript exons: 1344116-1344331,1344512-1344643,1344749-1344973,1345089- 1345175,1345269-1345607,1346770-1346915,1347027-1347120 GTGTTGACCTATGCCCAGCAATCGAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAGTGAAC GGATGCAAGAGTACAAGAGGCAGGTTGATCGGGAGAGTAGGTGGTCGTCAAATGGTTCTAATGG TTCTCCCAATGGAGATGGTATTCAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGAAGTC ATGCAATCTGCTGCAAAAGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTT CAAACTTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGGGGATTACTGTATTA TTATCGCAAGCAGTGTAACAAATCATCTGCGTCTCTATCACAACTAGCAGGTCAGAGGAATAGT TCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCTTTCTTCCCATTATCATGGTGGGGTGCATG ATGAGAAATCTGTAGCTCATCATACAGTAAACCTGCTCACTTCAACAATCAAAGTTGATGCAGA CCAGTCTGATCTTAGGTTCTGCTTTCGTATCATATCACCAACCAAAAGTTATACTTTGCAGGCA GAGAGCGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTTATTGCTTCATTACTAA GTTCTCAGGCTCCAGAGAGGTGTCTTGCGGGTAGTCCCATGGGAAGTGGTCATCACAGATCTAC TAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTGCGGTTGAAGAATACACATCG GAAAGAAGCCTTAGTTCCTCTCATATGGACCGCCCTTCAAGAAACTTGCAACAGCAACGATCAG TGATGAAAATTGAGAAGCCAATAGACATACTTCGTAGAGTATGCGGGAACGATAAGTGTGCAGA TTGTGGTGCTCCTGAACCTGACTGGGCATCTTTGAATCTTGGTGTTCTTGTTTGTATTGAATGT TCTGGTGTTCATCGTAATCTTGGTGTTCACATATCAAAGGTGAGATCCCTTACATTGGATGTCA AAGTGTGGGAACCTTCAGTTATCAGTTTGTTTCAATCCCTTGGAAATACCTTTGCGAACTCGGT TTGGGAGGAGATGCTGCAATCTAGAAGTGCCTTTCAGGTCGATCTTGTTACGGCAGGCTTGTAC AAGTCTGATAAACAGAATATGCATTTTATCAGCAAACCTAGTCACTCTGATCCAATATCAGTGA AGGAGAAGTTCATTCATGCAAAG
Genomic sequence	GTGTTGACCTATGCCCAGCAATCGAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAGTGAAC GGATGCAAGAGTACAAGAGGCAGGTTGATCGGGAGAGTAGGTGGTCGTCAAATGGTTCTAATGG TTCTCCCAATGGAGATGGTATTCAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGAAGTC ATGCAATCTGCTGCAAAAGGAAAGGTCAGGAAATATTTCATTTTTGTGTCCATTTGCATTATAT CACCGATTTCCCAAGGTGCAAGCAGTGTAACAAATATTTCATCTTTGGACATGAGCATTTATCT ATCTTTTTTGGGTGACTAATTTTTCTTTCCATTTTTGCCGCATGGCTTTAATTTTTTCTGTTCA ACTATAATTTAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAGCGTTCTTCAAACTTGAGAG GTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGGGGATTACTGTATTATTATCGCAAGCA GTGTAACAAATCATCTGTGAGTAATTTATTCATGTTACCTTGTCACGAGCAGGAAGATTTTCCC CCTCCCTCTGTTAAATGGTAGTGTCTGAATTTGCTTCATGTGTATGTGGGTTTGTAGGCGTCTC TATCACAACTAGCAGGTCAGAGGAATAGTTCAGAGCTTGGTTCTGGCCTTTTGAGCCGCTGGCT TTCTTCCCATTATCATGGTGGGGTGCATGATGAGAAATCTGTAGCTCATCATACAGTAAACCTG CTCACTTCAACAATCAAAGTTGATGCAGACCAGTCTGATCTTAGGTTCTGCTTTCGTATCATAT CACCAACCAAAAGTTATACTTTGCAGGTTTGATTTAGGGGCTAGTTTGAGCTGTAAATTGATGC TTCACTTCCAGAATTGTTGTATGAAGATTCTATAATTTTAAGGTTCCCTATAAATCTATTTCTG CATGTTAGTGTAGGCAGAGAGCGCACTTGATCAAATGGATTGGATTGAAAAAATAACTGGAGTT ATTGCTTCATTACTAAGTTCTCAGGCTCCAGAGAGGGTATTCACTCTGCCTTTCTTTTTGCTTG ACTTTTGAGGTCTTCAAATATTAATGTTTGAAGTTATTTGTGCAACTTTTTTATCTGCGTATCA GTGTCTTGCGGGTAGTCCCATGGGAAGTGGTCATCACAGATCTACTAGTGAGAGTAGTTCTTTT GAAAGTTCTGACTTTGATCAGACTGCGGTTGAAGAATACACATCGGAAAGAAGCCTTAGTTCCT CTCATATGGACCGCCCTTCAAGAAACTTGCAACAGCAACGATCAGTGATGAAAATTGAGAAGCC AATAGACATACTTCGTAGAGTATGCGGGAACGATAAGTGTGCAGATTGTGGTGCTCCTGAACCT GACTGGGCATCTTTGAATCTTGGTGTTCTTGTTTGTATTGAATGTTCTGGTGTTCATCGTAATC TTGGTGTTCACATATCAAAGGTATCTTGAACTTGCTTTTCATGCACTTTATCCAGTAGTGGTGT ATCCTGTGGGTGATCTTCTACCATTAAGAAAGCATCATGCTATTATAAAAGGGCAGTGTATGCA TGCGATATATGTAATTATCTTGTAATGATTTATTAAAAATGTGAGTTAATTCCATGACAATGTT CTGAGTGGCATGAAAGCAGTATCCAAATGGCTGTTGGGTAATCTGACAAGCCTAGCATGATAAA ACTTTTGTGGAACTAACCATGTAGTTGAAGAAATTCACTCAGTATTCGTGTTGTAGTTCATGTA ACCAGGAGCAAATAAAACAATCATTTGTTTCCTGATCTTTTGTCGTGTTCATAATTCTGTTTGA GTAGATGAGGTGCTAAAAAACTTGGCAGTTCCATATGTGAAATAAAGGGTTCCTAGTGGAAAGT AATGTGGGAAGAACTCATATAAATGACTGGTGCTGATGTTGCCTAAGTGGTCTTTAGGAGAATC CTCCGAGAACCAAGATTGTTAATCTTTTTATTAGAATGAATAATGTGTTTCATATGAGAGGGGA ATACACCTATTTATAGAGTTATTACGAGTGGGGATGGAAAGGAAATTATTTAGAATATTAATTA GTTATCGAGTTAACCCCTCCTTCTTACATCAGCTGTTTTACGTCAGCCCCTGTTTTTTTGTTAA TCTCATTGTGGTTTTCCTTTGTGAAATGGTGTTGATTATTGTTAACGCTTCATTGTAAATTTGT TGTACTTCTTTACCGTTAAAGGTCAATGTGTGCAGCCATAAGTAAGACAATTTTACATCACAAT AGTTTGATTACTAGCTTTCATATAATTACCTTATAATAGGGCCTTTGGTATTCATTTCACCACA TCAATGATATGCTTTTGTTCCATTTAAACAGAATAGTTTTATAACCTTTATATGATATTGCATT TATTGTCCTGTTTACAGGAAGTATGTGAATGTGTTCCTTGTTGCTTTTTAAAAGTGAAAAAAAT TAACCTAGAAATTAATTGGGTTAGTACACAAGATTGCTAAAAGTAAAGCTTTTCACTCGGTGGT GCCCTTGGTTTTTGATAAAGATATTTCTGTGGTTAGTAATTCTTGTTGCTTCCTGCATTCTAAA TGCTTACGGCTTACCTCTGCAATTGTGTAGGTGAGATCCCTTACATTGGATGTCAAAGTGTGGG AACCTTCAGTTATCAGTTTGTTTCAATCCCTTGGAAATACCTTTGCGAACTCGGTTTGGGAGGA GATGCTGCAATCTAGAAGTGCCTTTCAGGTCGATCTTGTTACGGCAGGGTAAATGAACTTCACT ATTCAGTCAGTCATAAGTTTTTCAAGACAATGTTCAATATCCACTTTCATTTTATTTGGTTTTG CTAACATTCACCTATTATTTTTGTGGTGAAGCTTGTACAAGTCTGATAAACAGAATATGCATTT TATCAGCAAACCTAGTCACTCTGATCCAATATCAGTGAAGGAGAAGTTCATTCATGCAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.895535055

Conservation Information
Conserved circRNAs	NA
PMCS	0.895535055

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1344183-1347117(+)
						
					

						Potential amino acid sequence
						
							MQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSS
NLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHD
EKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLS
SQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQRSV
MKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVK
VWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISKPSHSDPISVK
EKFIHAKVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSS
HKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQ
LAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPT
KSYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQT
AVEEYTSERSLSSSHMDRPSRNLQQQRSVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLG
VLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVD
LVTAGLYKSDKQNMHFISKPSHSDPISVKEKFIHAKVLTYAQQSRERSNYEQAALSERMQEYKR
QVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDW
KRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH
HTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQAPER
CLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQRSVMKIEKP
IDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSV
ISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISKPSHSDPISVKEKFIHA
KVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEE
VMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRN
SSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQ
AESALDQMDWIEKITGVIASLLSSQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYT
SERSLSSSHMDRPSRNLQQQRSVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIE
CSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGL
YKSDKQNMHFISKPSHSDPISVKEKFIHAK
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to salt stress in root
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1344183-1347117(+)
Potential amino acid sequence	MQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSS NLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHD EKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLS SQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQRSV MKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVK VWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISKPSHSDPISVK EKFIHAKVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSS HKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQ LAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPT KSYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQT AVEEYTSERSLSSSHMDRPSRNLQQQRSVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLG VLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVD LVTAGLYKSDKQNMHFISKPSHSDPISVKEKFIHAKVLTYAQQSRERSNYEQAALSERMQEYKR QVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDW KRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH HTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQAPER CLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQRSVMKIEKP IDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSV ISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISKPSHSDPISVKEKFIHA KVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEE VMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCNKSSASLSQLAGQRN SSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQ AESALDQMDWIEKITGVIASLLSSQAPERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYT SERSLSSSHMDRPSRNLQQQRSVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIE CSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGL YKSDKQNMHFISKPSHSDPISVKEKFIHAK
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa4G008220_circ_g.3

Address

Any questions?

Supported by