Plant Circular RNA Database

Detail information of BGIOSGA018790_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA018790_circ_g.1
					
						ID in PlantcircBase
						osi_circ_015897
					
						Alias
						Chr08:3259796_3273067(MH63RS2), Chr08:3259796_3273067(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr5: 3201621-3205125  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ie-circRNA							
									
						Identification method
						CIRCexplorer2, CIRCexplorer2
					
						Parent gene
						
							BGIOSGA018790						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA018790_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							NN-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA018790-TA:9

General Information
CircRNA Name	BGIOSGA018790_circ_g.1
ID in PlantcircBase	osi_circ_015897
Alias	Chr08:3259796_3273067(MH63RS2), Chr08:3259796_3273067(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr5: 3201621-3205125 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ie-circRNA
Identification method	CIRCexplorer2, CIRCexplorer2
Parent gene	BGIOSGA018790
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA018790_circ_g.2
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	NN-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA018790-TA:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAAAAAAAAAGTGTATTTTCACATGTTAAACGAGTGTTACATACAAGGATATTACCAGATTTA
GCTTGCAAACACAAAAGATGCAAAACATAACAGAGTcctgatttactctattttcgaatgattc
catcatggtgcgtcctggctcagcttccaattgtttatcctgattttgcttaataagctccttc
acatcatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTGATTTACTCTATTTTCGAATGATTCCATCATGGTGCGTCCTGGCTCAGCTTCCAATTGTTT
ATCCTGATTTTGCTTAATAAGCTCCTTCACATCATCTTTAGCTTTTGAGATTGTCTCATTAATC
TTCACCATGGTGGCAGCATCTGCAATTGTATCCCCAATTCCAATACTGAAACCATTTTGCAGAA
GCCAGTAGTTGACTAGCCACTGTGTATGACCTAAGAACTTGCGAGCAGCATCTGGACCAACCTC
TTCCCTGCAAAGAGCAAGACATAACTTGCTAAGCGAAAGGCCAAACGGAATATAACTAAAAACT
GCAGCTAATCTTCAACATTAAAAGTTAATTACAGCATTCTCACCAAATAACATGAATAAGACTT
CCAGTTGATGTCCCAAGTGTCTTTTTGCAAAGTGTACCAGATAGAAGCTCTCCCTTCTCTATCC
GGACCATAGTATCACCAGGAGTAATAAATCCTGTTTCAGCTTCAGAATGCCAGGCTGAAAATCT
AATTAAATTGATTGGCTTGGGAATAATCAAGTTGAAAACTTGTTTCCCAGTCCAAATAGGCCTT
GGTTTCAAAATGGCAGGGGCAGGGACCTTTCCATCGAAATCTTCCCACCACATTAAGATGTTCA
TAAACACATCCTGGAGAAAAAAAGGGAATGATGAGCATAACTGAGCAGAAAAGAACTACTTAAG
GTATCATGTGCAGACTTGCTAACCTTTTCAATAAGAGTATCTCTTTTAGTAATTTTGCGACAGC
CAAGAAGCGTGTCCTGGACAATACCCATAACAGGCCTATTCGACTGAGGAGACACAATACATTT
TGGAACCATCATCAACTCTAGAACTTCAGCTCTGGTCTCAAATGACTGTGGAACATGCATATTC
ATTTCATCCCCATCAAAATCTGCATTGTATGGTGAAGTAACGGACAGGTTTAGGCGAAAAGTTG
AATACGGCATGATTTTAATGCGATGCCCCATGATAGACATTTTGTGAAGACTGGGCTGCCGGTT
GAAGAGAACAAAATCTCCATCATTGAGGTGCCTTTCCACCTGACAAAATAGAACACCAAATGAG
GGGACTAATATAGAAGACAATATTGTCATATGAACATCAGTAAAGCAGATTCTACAATAAAGTT
GGTATTCACCTTGTATCCCAGCTCCAGATGCTGATCACTACTTTTCTTCACATAACGAAGATCA
AGCCTCTGACCGTCTTCCCTGATAATATACTTTGCACCTGTCTTGCCAGGGGGAGGGTGAGGCC
CATATTCAACAAGCTCTTTCAATCTGAGATCATTGAATTTAGGTGTAAGTGATCATTAAAACAT
TAAAGAACTGTGATCATGCCTCAATAACAGTAAAGATGTGTTCTATGGGACAATTTCGTTTCTG
CCCCTACTCTGATGTCTAATATTGATTTTACCCCTACTTTTTAGGGTTTTCGTTTTTACCCTCA
CTTTTTTGAACTGAACGCTTGTTTTACCCCTACTTTGGATGGTGAAGTTAACGGTGTTAAGTAA
TTGACAAAATGACATTTATACCCTCTCATATATGCTCATTAATTGTGTTTTTGTCCCCATTTTA
TGCATGTAGCTTTAGAACTTTAGTTTTGTGAGTATATTTAAAATTACATGAAGCACATTGACTA
ATATCTAAAGGGAACAGATAATTACATTTTACAAAATGTTGTCAAAATTTTGTTTAAGTTCTAT
CAAAATGCTGAAATTTTATCAAAATTCCATCAAATTCAGAATTTGTCCAAATTGTTATATTAGT
CAATGTGCGTCATCTAATTTTAAATATACTCCCAAAAATAAAGTTCCAAAGCTACATGTATAAA
ATGGGAAACACAATTAATGAACATACATGAGAGGGTATAAACGTCATTTTATCAATTACTTAAC
ACCGTTAACTTCACCATCCAAAGTAGGGGCAAAACAAGCATTCAGTTCAAAAAAGTGAGGGTAA
AAACGAAAACCCTAACAAGTAGGGGTAAAATCAATATTAGACATCAAAGTAGGGGTAGAAACGA
AATTGCCCCTTTTTTTATTACCTCTCGATGTTATATGGAGTGACAGTTTCTGGGTATGTCAAGT
TCAAAGCAATACTCCATGGCACTCCCAATTCATCAATGTTAATATTCGGATCTGGTGTGATGAC
AGTACGAGCTGAGAAATCAACACGCTTTCCCATCAAGTTTCCTCTAATGCGGCCTTCCTTTGCT
TTCAGCCTGCTGCAAATTGATTTAATAGGCCTTCCAGAACGCTGTGTGGCCTGAAAATTGCAAC
AAAAGATAATCAGGATAACTTATTTGCATCAAATAAAATGGCAAAATGACTGTAATCTGCTCAC
CCTTGGCTGGCCAGGAAGTTCATTGTCGAAGTATGTTGCAATGTGAAATTGCAACAATTGAGCA
AACTCTGTTATTATGTGAGCTGGGGCCCCATTTCTCTCCTGCCTCCTCAAGTTCTCATTATGTC
GAATTATCATAGCTAATTGATGAGTCAAATCATCCTGTAAAGAATAGCAGTGAGTTCATGAAGG
TGCATCATTCTTAAAATCATCCAGTAGGAAGGTTAAAAAAAAAAGTGTGGCATATAACTCACCT
CACTTCTGGAAGAGGTATCCATCATGACAGATGGCCTCACAGGGGGTGGGGGAATTGGAAGGAC
TTGCAAAATCATCCAGTCAGGGCGGGCAAATTTAGGGTTCAGACCCAATAGAAGACAGTCTTCG
TCACTTATACGTTTAAGAACATTGAGCACCTAAGTACAAAATAAACAGGAACCACATAGTTAAA
TGGATATTCTTAAAAATAATGTATTGAACCTGAGTAAAGATTGTGTGCATACCCTCTCAGCTGA
GAGGATTTGCTTTCGCTCCACTGGTTCAGGGAGTTGCTCTTGATCATCGTTTTTCTTCTTTGGT
GCTTTAAACTCTGCAACCATCTTCATACCATCAACAGTGATATTTGGCTGCTGAGCACCACAGC
CACCTCTTTTCTTTACTGGCTCATCAGTATCTTGCTGCTCCTGAACATCGAGGTCATCACCCCC
CGCGCAAACTTTTTTGCTCTTGCAAGCATCATATATTCTTTTCAGTCTATTTTTTGGGTTCCTT
ATTTTAAGAGCCTGCTTGAACTTAGTATCATCCTGCAACAAAAGCATTCATCCATTGATAAATA
AACTCAGAGTTGAGAAAAGATGGAAAACATAAGAGCTAGATCCGGTACAAAGATAAAATAAGAT
TTACGTTTGCATGTATAGTCCGAATAAACATTTTATATCATTATGATTCCAGTTTAGCATGTCT
AGCATTGAAAACAAAGGCATCTTCCGGTTTTTGCCTTAACAGTAAAAAAGAGGACAACAGAAGG
GGAAAAGTAAGTCACAAAAAAAAAGTGTATTTTCACATGTTAAACGAGTGTTACATACAAGGAT
ATTACCAGATTTAGCTTGCAAACACAAAAGATGCAAAACATAACAGAGT
						
					

			
		

Sequences
Splice junction sequence	ACAAAAAAAAAGTGTATTTTCACATGTTAAACGAGTGTTACATACAAGGATATTACCAGATTTA GCTTGCAAACACAAAAGATGCAAAACATAACAGAGTcctgatttactctattttcgaatgattc catcatggtgcgtcctggctcagcttccaattgtttatcctgattttgcttaataagctccttc acatcatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTGATTTACTCTATTTTCGAATGATTCCATCATGGTGCGTCCTGGCTCAGCTTCCAATTGTTT ATCCTGATTTTGCTTAATAAGCTCCTTCACATCATCTTTAGCTTTTGAGATTGTCTCATTAATC TTCACCATGGTGGCAGCATCTGCAATTGTATCCCCAATTCCAATACTGAAACCATTTTGCAGAA GCCAGTAGTTGACTAGCCACTGTGTATGACCTAAGAACTTGCGAGCAGCATCTGGACCAACCTC TTCCCTGCAAAGAGCAAGACATAACTTGCTAAGCGAAAGGCCAAACGGAATATAACTAAAAACT GCAGCTAATCTTCAACATTAAAAGTTAATTACAGCATTCTCACCAAATAACATGAATAAGACTT CCAGTTGATGTCCCAAGTGTCTTTTTGCAAAGTGTACCAGATAGAAGCTCTCCCTTCTCTATCC GGACCATAGTATCACCAGGAGTAATAAATCCTGTTTCAGCTTCAGAATGCCAGGCTGAAAATCT AATTAAATTGATTGGCTTGGGAATAATCAAGTTGAAAACTTGTTTCCCAGTCCAAATAGGCCTT GGTTTCAAAATGGCAGGGGCAGGGACCTTTCCATCGAAATCTTCCCACCACATTAAGATGTTCA TAAACACATCCTGGAGAAAAAAAGGGAATGATGAGCATAACTGAGCAGAAAAGAACTACTTAAG GTATCATGTGCAGACTTGCTAACCTTTTCAATAAGAGTATCTCTTTTAGTAATTTTGCGACAGC CAAGAAGCGTGTCCTGGACAATACCCATAACAGGCCTATTCGACTGAGGAGACACAATACATTT TGGAACCATCATCAACTCTAGAACTTCAGCTCTGGTCTCAAATGACTGTGGAACATGCATATTC ATTTCATCCCCATCAAAATCTGCATTGTATGGTGAAGTAACGGACAGGTTTAGGCGAAAAGTTG AATACGGCATGATTTTAATGCGATGCCCCATGATAGACATTTTGTGAAGACTGGGCTGCCGGTT GAAGAGAACAAAATCTCCATCATTGAGGTGCCTTTCCACCTGACAAAATAGAACACCAAATGAG GGGACTAATATAGAAGACAATATTGTCATATGAACATCAGTAAAGCAGATTCTACAATAAAGTT GGTATTCACCTTGTATCCCAGCTCCAGATGCTGATCACTACTTTTCTTCACATAACGAAGATCA AGCCTCTGACCGTCTTCCCTGATAATATACTTTGCACCTGTCTTGCCAGGGGGAGGGTGAGGCC CATATTCAACAAGCTCTTTCAATCTGAGATCATTGAATTTAGGTGTAAGTGATCATTAAAACAT TAAAGAACTGTGATCATGCCTCAATAACAGTAAAGATGTGTTCTATGGGACAATTTCGTTTCTG CCCCTACTCTGATGTCTAATATTGATTTTACCCCTACTTTTTAGGGTTTTCGTTTTTACCCTCA CTTTTTTGAACTGAACGCTTGTTTTACCCCTACTTTGGATGGTGAAGTTAACGGTGTTAAGTAA TTGACAAAATGACATTTATACCCTCTCATATATGCTCATTAATTGTGTTTTTGTCCCCATTTTA TGCATGTAGCTTTAGAACTTTAGTTTTGTGAGTATATTTAAAATTACATGAAGCACATTGACTA ATATCTAAAGGGAACAGATAATTACATTTTACAAAATGTTGTCAAAATTTTGTTTAAGTTCTAT CAAAATGCTGAAATTTTATCAAAATTCCATCAAATTCAGAATTTGTCCAAATTGTTATATTAGT CAATGTGCGTCATCTAATTTTAAATATACTCCCAAAAATAAAGTTCCAAAGCTACATGTATAAA ATGGGAAACACAATTAATGAACATACATGAGAGGGTATAAACGTCATTTTATCAATTACTTAAC ACCGTTAACTTCACCATCCAAAGTAGGGGCAAAACAAGCATTCAGTTCAAAAAAGTGAGGGTAA AAACGAAAACCCTAACAAGTAGGGGTAAAATCAATATTAGACATCAAAGTAGGGGTAGAAACGA AATTGCCCCTTTTTTTATTACCTCTCGATGTTATATGGAGTGACAGTTTCTGGGTATGTCAAGT TCAAAGCAATACTCCATGGCACTCCCAATTCATCAATGTTAATATTCGGATCTGGTGTGATGAC AGTACGAGCTGAGAAATCAACACGCTTTCCCATCAAGTTTCCTCTAATGCGGCCTTCCTTTGCT TTCAGCCTGCTGCAAATTGATTTAATAGGCCTTCCAGAACGCTGTGTGGCCTGAAAATTGCAAC AAAAGATAATCAGGATAACTTATTTGCATCAAATAAAATGGCAAAATGACTGTAATCTGCTCAC CCTTGGCTGGCCAGGAAGTTCATTGTCGAAGTATGTTGCAATGTGAAATTGCAACAATTGAGCA AACTCTGTTATTATGTGAGCTGGGGCCCCATTTCTCTCCTGCCTCCTCAAGTTCTCATTATGTC GAATTATCATAGCTAATTGATGAGTCAAATCATCCTGTAAAGAATAGCAGTGAGTTCATGAAGG TGCATCATTCTTAAAATCATCCAGTAGGAAGGTTAAAAAAAAAAGTGTGGCATATAACTCACCT CACTTCTGGAAGAGGTATCCATCATGACAGATGGCCTCACAGGGGGTGGGGGAATTGGAAGGAC TTGCAAAATCATCCAGTCAGGGCGGGCAAATTTAGGGTTCAGACCCAATAGAAGACAGTCTTCG TCACTTATACGTTTAAGAACATTGAGCACCTAAGTACAAAATAAACAGGAACCACATAGTTAAA TGGATATTCTTAAAAATAATGTATTGAACCTGAGTAAAGATTGTGTGCATACCCTCTCAGCTGA GAGGATTTGCTTTCGCTCCACTGGTTCAGGGAGTTGCTCTTGATCATCGTTTTTCTTCTTTGGT GCTTTAAACTCTGCAACCATCTTCATACCATCAACAGTGATATTTGGCTGCTGAGCACCACAGC CACCTCTTTTCTTTACTGGCTCATCAGTATCTTGCTGCTCCTGAACATCGAGGTCATCACCCCC CGCGCAAACTTTTTTGCTCTTGCAAGCATCATATATTCTTTTCAGTCTATTTTTTGGGTTCCTT ATTTTAAGAGCCTGCTTGAACTTAGTATCATCCTGCAACAAAAGCATTCATCCATTGATAAATA AACTCAGAGTTGAGAAAAGATGGAAAACATAAGAGCTAGATCCGGTACAAAGATAAAATAAGAT TTACGTTTGCATGTATAGTCCGAATAAACATTTTATATCATTATGATTCCAGTTTAGCATGTCT AGCATTGAAAACAAAGGCATCTTCCGGTTTTTGCCTTAACAGTAAAAAAGAGGACAACAGAAGG GGAAAAGTAAGTCACAAAAAAAAAGTGTATTTTCACATGTTAAACGAGTGTTACATACAAGGAT ATTACCAGATTTAGCTTGCAAACACAAAAGATGCAAAACATAACAGAGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA018790_circ_g.1

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