Detail information of Os01g0600200_circ_g.1


General Information
CircRNA Name Os01g0600200_circ_g.1
ID in PlantcircBase osa_circ_002497
Alias NA
Organism Oryza sativa
Position chr1: 23571641-23574559  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0600200
Parent gene annotation Ser/Thr specific protein phosphatase 2A B regulatory subunit bet
a isoform. (Os01t0600200-01)
Parent gene strand +
Alternative splicing Os01g0600200_circ_g.2 Os01g0600200_circ_g.3 Os01g0600200_circ_g.4 Os01g0600200_circ_g.5 Os01g0600200_circ_g.6 Os01g0600200_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0600200-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCT
GAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTtggacatcatatcggcaatagaattcaa
taaatcaggacagcatcttgccactggggacagaggggggcgagttgttttgtttgaaaggaca
gatgccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGACATCATATCGGCAATAGAATTCAATAAATCAGGACAGCATCTTGCCACTGGGGACAGAGG
GGGGCGAGTTGTTTTGTTTGAAAGGACAGATGCCAAGGATGTATGTATATGGAACTGACTGTGC
ATTTTCACAAAGGAAGTCATATGACCTTGTCTTGTCTCGCTCTGATGACTGAACATATTTTCTT
TCTGTTTCCCTTAGAATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCA
TCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAGAGGTATATTGTACAAGACTA
ACTGCTTAGTGAAGTACCTGTAATTTCTGTTGTTTAACTAATTTGTCTTGTCATGCGATTAGTT
TGATTATCTGAAGAGCTTGGAAATTGAAGAGAAGATTAACAAGATAAAGTGGTGCCAAACAGCA
AATGGAGCATTGTTTCTTCTGTCCACAAATGATAAGACAATAAAGTTTTGGAAGGTATTATTCA
TCATTTAGAAATCATAGAAATTTCTTGTAAACCAGTATTGCTAAACTGTTGCATGCTTCTTTAC
ATATGTATGTGCAACTCAGTGATAATTTTGAATTTTCTGATGTTCAAAATTTGCTTTACACATT
TTAACATCTTGAAAAATGCTTTTTAAATACTTAATGTACTCTGTCCTTTCCAGGTTTATTTGCT
ACCAAAAGTTTGCCCTGGCAATGGATTATTCTTTTATTCTTGTACTTACCTGAGCTATATTAAT
CGGAGTTTTTTTTTTATTTGTAGGTTCAAGAAAAGAAGGTCAAAAAGGTATCTGAGATGAATTT
GAGCCCTTCAAATGCATCTGCAAATGGTAGACCTGCTGGCAGTAATGCTAGTGGTTCGAGCGCA
TATCTCCCAAATGGTGGCATTTCAAAACCTGTTGGACTCAATTCGCTTCGCCTGCCTGTGGTGG
TAGTACCGAACTTAAAATTTTCATTACCACAAGAAAATCTATTCGAAATTGGTCTCAGACAGTA
TTATTGAGCTAATTCCTGCCATTTCTGTTGTGCCTAGCATGCATCTTCAACTATTCAGTTGTTT
TTATTGCCTCATATGTATTTCCTGTGTTTATTGTAACTTTATTTCTTTGATTTGTTATATTTAC
TTAACTTTGTATGACAGGTTACAAGCCAAGAAACAAGTCTTTCTGCAAGTTGCCGAAGAGTCTT
TACGCATGCACATGACTACCATATAAACTCTATTTCAAATAACAGGTCTTCTACATTATTAATT
TTTTTATTTAGTTGTATAATAGATATTATTTGAACTTGTTGCTATTGAATATGACCACGGCCAT
TAGCTCCAAATGAGTGTTGCTAGAAAAGGGCCTTCTTAAGGGCAAAAGCTTATTTGGTTTCACC
TTGCACATGATAACTGCATCTAGCATATTTGTAACCAACCAAGCCACCTAGCTTCACAGTTTCT
GCATATATGATAAATTTGCATCCCACAATATGCCAAATTTATTTGCTCTTTGACATACCAGAAT
AAAGTTCTCAATATCCTTTTAGGGACTCTTTGTTTGATAATCTCAATGTAAAACATACCTTAAT
GTGCCTTAACTAGTACGGAAATCAGGGTAGCGAAAGCCTAACAGATTCATATCTACTACCTCTG
TAGTAATATTGTATAGTTTTGGGAAGTTCATCTGAACCCTGTAGCCCAAGATCACTATAGTCAA
TTCATTCTCCACAGGAGATTTTTGATGCTTGTGCCGTATTTGTGTGCGCGCTGAAAATTTGTCA
TCTGTAGTAATATCGTCTGTGATTGAGCTGTATGCCATCAGCTATAGATAATTTAATACACCAC
CTCCTACTTTCCATGTGTGTTTGCTATATATTTTGCTGATGTGCATCTCATATACATTCGATTA
GATGTAATGTACCCTTTCGAGTTTTATGTAGTGACATATTGTTGCCTGCTCTTTTTTTTTTCGA
CAGTGATGGTGAGACTTTCATATCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATT
AGCAACCAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGGTATAA
CTTTCAAATCTTCAAACTCTTAGCTATGCTGACTAGTGAGTATTAACATATACAGCCTTTTCTC
ACACAATGGGAAAAAAATGCAGTCCTATATAGCTACAGTAAGCAAAATTATGTGACTGATGTTC
AACCCATGGTCTAGTCATTCTGAATTGTCATGTATTCAAACAGTTCTGCATTATGCTAACTGCT
AACACTGTTTCCTTGCATGCAATTATGACAAATAAGTCAGCTAAGCTAAGATGTGTTTTAGTAA
AATGGATTTGTGTGATAATTAAGTTTGTATGTCAAAGATGGTTTACTGGTTTTTGTGCAAGTGT
ATCCTAACCGACCTTTGTTGTTTTACTACACCTTTCAAATTAAGAGGTACTCCCTCCATCCACA
AAAGTTAGACATATTACTTTTGACACCAAGACCAAGGAGAAATTAAATCACCTTGGATGTTACA
AAATCAAGTAGTGAATGCAAGCATGCAACCAATGAGTATTTAGAGGACTCCTTGGGATCTAATA
AAACATTTAATTTATCTCTTCATTTAAGTCTTAAATGCATAAAGACTACAAATAGGAACCACTT
ATTTGGAAAAACTCAAATGTGAAATATGTGTAACTTTTGTGGATGGAGGGAGTATCATCTATCT
GCCCAATGTATTTATCGATATTATTTTATTGTATTGTGTGCAGAGGTGATAACATCTGCTGAGT
TCCACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGA
CCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGT
Conservation Information
Conserved circRNAs osi_circ_002191*
PMCS 0.138529927
Functional Information
Coding potential Y
Potential coding position 23572466-23571668(+)
Potential amino acid sequence MNLSPSNASANGRPAGSNASGSSAYLPNGGISKPVGLNSLRLPVVVTSQETSLSASCRRVFTHA
HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDVKPTNMEDLTEVITSAEFHPTHC
NTLAYSSSKGSIRLVDLRQSALCDTHSQVGHHIGNRIQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017