Detail information of Os08g0451700_circ_g.3


General Information
CircRNA Name Os08g0451700_circ_g.3
ID in PlantcircBase osa_circ_037269
Alias NA
Organism Oryza sativa
Position chr8: 22083798-22085609  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os08g0451700
Parent gene annotation Conserved hypothetical protein. (Os08t0451700-01);Conserved hypo
thetical protein. (Os08t0451700-02);Conserved hypothetical prote
in. (Os08t0451700-03)
Parent gene strand -
Alternative splicing Os08g0451400_circ_ag.1 Os08g0451400_circ_ag.2 Os08g0451400_circ_ag.3 Os08g0451400_circ_ag.4 Os08g0451400_circ_g.1 Os08g0451500_circ_ag.1 Os08g0451500_circ_ag.2 Os08g0451500_circ_ag.3 Os08g0451500_circ_ag.4 Os08g0451500_circ_ag.5 Os08g0451500_circ_ag.6 Os08g0451700_circ_g.1 Os08g0451700_circ_g.2 Os08g0451700_circ_g.4 Os08g0451700_circ_g.5 Os08g0451700_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0451700-02:5
Os08t0451700-01:2
Os08t0451700-03:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCAAGCATCGTGCACTTCACCCTTGAGCTGCTCAGGAAATGAGGCATGGTTGAACAAAAAAA
CACCACAGATCCGCAACCGTTGAACCCTGCAAAGGCctctcaagccacaggagatcaaatggtg
cacggatcacatagctacggctgttgcggatgctgatgccgcccccacgatggataacatgcca
tccagtaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 908
Transcript exons: 22083798-22083857,22083985-22084318,22084763-22084834,22
084951-22085186,22085404-22085609
CTCTCAAGCCACAGGAGATCAAATGGTGCACGGATCACATAGCTACGGCTGTTGCGGATGTCGG
GTGCATGGTAAGAAGTGTTCCGGGGAAATATGTGTCCCACAAATTCTTATAGAAGCTCTAAGAA
AATCACCTAACATTTTCTACGGAGTATAAATGTCCGTCACATAAATAAAGTCCTACAGCGCATT
GAAACAGAAGCTTAATGTAGTATCAGTCATCATTTAATTGAAAGCTATACTTCTCTTCACTCTG
TCCTTCGCAAGGGATGCAGACCATCTGGCAGATCGGAATATAAATCATTTCCAATAGCTTCATC
TTCATCTTGGTTCGTGCAAAAAAGAAGAAGCCGATCCACGCCTTGTCTATCGAATGAAGAAACT
GAAGTGCCATCTCTCAAGCCACGGGAGATCAAATGGTGCACGGATCACATAGCTATAGCTGCCG
CGGATGCTGATGCCGCCGTAGGGTGCATGGTAAAAAGTGTTTCGGGAAATATGTGTGTCCCACA
AATTCTTATAGAAGCCCTAAGAAAATCGCCTAACATTTTCTACGGGGTAAGTATATTGGGCTTT
TGCTTGTGTCCACAGGACTGGCTTCCTCGTTGTGTGCAGTTCAAACACCGGCTTAATGTGTCGG
GAACATTTCTGCTCTTCTGGCAAGATTTAATTGCTGCTAATTTAGCCCAACTAACTAGCATCCT
TCCAGACGAGATCAACTCCGGGAATGGGAATGACGGCCACAGCCGCTGGGACTCGGGCATTGGA
CCAGGTGGCGTCCGCTGCTTGCCTACCTTACCGCACAGCACTGCAAGCATCGTGCACTTCACCC
TTGAGCTGCTCAGGAAATGAGGCATGGTTGAACAAAAAAACACCACAGATCCGCAACCGTTGAA
CCCTGCAAAGGC

Transcript length: 950
Transcript exons: 22083798-22083857,22083985-22084318,22084763-22084876,22
084951-22085186,22085404-22085609
CTCTCAAGCCACAGGAGATCAAATGGTGCACGGATCACATAGCTACGGCTGTTGCGGATGTCGG
GTGCATGGTAAGAAGTGTTCCGGGGAAATATGTGTCCCACAAATTCTTATAGAAGCTCTAAGAA
AATCACCTAACATTTTCTACGGAGTATAAATGTCCGTCACATAAATAAAGTCCTACAGCGCATT
GAAACAGAAGCTTAATGTAGTATCAGTCATCATTTAATTGAAAGCTATACTTCTCTTCACTCTG
TCCTTCGCAAGGGATGCAGACCATCTGGCAGATCGGAATATAAATCATTTCCAATAGCTTCATC
TTCATCTTGGTTCGTGCAAAAAAGAAGAAGCCGATCCACGCCTTGTCTATCGAATGAAGAAACT
GAAGTGCCATCTCTCAAGCCACGGGAGATCAAATGGTGCACGGATCACATAGCTATAGCTGCCG
CGGATGCTGATGCCGCCGCTGCGGCAGATCACATAGCATCATGTAAAAGAGATGAAAGTATAGG
GTGCATGGTAAAAAGTGTTTCGGGAAATATGTGTGTCCCACAAATTCTTATAGAAGCCCTAAGA
AAATCGCCTAACATTTTCTACGGGGTAAGTATATTGGGCTTTTGCTTGTGTCCACAGGACTGGC
TTCCTCGTTGTGTGCAGTTCAAACACCGGCTTAATGTGTCGGGAACATTTCTGCTCTTCTGGCA
AGATTTAATTGCTGCTAATTTAGCCCAACTAACTAGCATCCTTCCAGACGAGATCAACTCCGGG
AATGGGAATGACGGCCACAGCCGCTGGGACTCGGGCATTGGACCAGGTGGCGTCCGCTGCTTGC
CTACCTTACCGCACAGCACTGCAAGCATCGTGCACTTCACCCTTGAGCTGCTCAGGAAATGAGG
CATGGTTGAACAAAAAAACACCACAGATCCGCAACCGTTGAACCCTGCAAAGGC

Genomic sequence CTCTCAAGCCACAGGAGATCAAATGGTGCACGGATCACATAGCTACGGCTGTTGCGGATGCTGA
TGCCGCCCCCACGATGGATAACATGCCATCCAGTAAAAGAGATGGAAGTATTGATTAGAATAAG
AAAAATGCAATATTACATAAGAAAATAGTACTAATTTAGTCATGATTGATAAAGCTTACTCGGG
TGCATGGTAAGAAGTGTTCCGGGGAAATATGTGTCCCACAAATTCTTATAGAAGCTCTAAGAAA
ATCACCTAACATTTTCTACGGAGTATAAATGTCCGTCACATAAATAAAGTCCTACAGCGCATTG
AAACAGAAGCTTAATGTAGTATCAGTCATCATTTAATTGAAAGCTATACTTCTCTTCACTCTGT
CCTTCGCAAGGGATGCAGACCATCTGGCAGATCGGAATATAAATCATTTCCAATAGCTTCATCT
TCATCTTGGTTCGTGCAAAAAAGAAGAAGCCGATCCACGCCTTGTCTATCGAATGAAGAAACTG
AAGTGCCATCTACACAAGCAATTCCGAGTGGAACCAGGCTTTTGTAAGACGTTTCTTGAGCAAG
ATATTTCAAAACCAGCAGAGTTCAAATAAATCTTCAGTTAGTGATAAACAAGGGTATAAAACAC
CATATGTTTTGAGTTTAGTAGTGTATCGATTATCAGTATATCACACATAACACCAAGGATGCCG
GCAGAAGCACAAGAAGCATTTGATTTGGTGGCGGCAACGGCAGCAGAAAGGGTAGAGCGGGGCT
GTGGGGGCGAGAGAGCTATGAACCCTAGTTTAGCCTCAGCACAAATCCCCCTCTTGAATCATTT
AATACAGCCAGAATGAAGGGGAAAACGCTAATAAATAGCCAAGCAATTAGAAATCACTATAGGC
GAGACAAAACGGCAAAGATCATGATGCCAAAAGAAAAATTATTTGGCCGGGAGGACCAGAGTGA
CGAACCTCTCAAGCCACGGGAGATCAAATGGTGCACGGATCACATAGCTATAGCTGCCGCGGAT
GCTGATGCCGCCGCTGCGGCAGATCACATAGCATCATGTAAAAGAGATGAAAGTACTGATTGGA
ATAAGAAAAATGCAATATTACATAAGAAAATAGTACTAATTTAGTCATGATTGAGAAAAGCTTA
CTAGGGTGCATGGTAAAAAGTGTTTCGGGAAATATGTGTGTCCCACAAATTCTTATAGAAGCCC
TAAGAAAATCGCCTAACATTTTCTACGGGGTAAGTATATTGGGCTTTTGCTTGTGTCCACAGGA
CTGGCTTCCTCGTTGTGTGCAGTTCAAACACCGGCTTAATGTGTCGGGAACATTTCTGCTCTTC
TGGCAAGATTTAATTGCTGCTAATTTAGCCCAACTAACTAGCATCCTGTGAAAGAGATGGAAGC
ATGATTATTGGTTGGAATAAGAAAAATGTCATATTATGTACTCCCTCCGTTCTAAAATAAATAA
ACCTAGTACGGGATATGATAGAGAAAGTATATGTGAGTGGTGACACCGGTGCCCTAACATCCTG
GATCCACCCCTTAGCCAACTATTAAACTTGCTCTACAAAAATAAACAGCAAAAGGATAGTCACG
TCCAACCTTCCAGACGAGATCAACTCCGGGAATGGGAATGACGGCCACAGCCGCTGGGACTCGG
GCATTGGACCAGGTGGCGTCCGCTGCTTGCCTACCTTACCGCACAGCACTGCAAGCATCGTGCA
CTTCACCCTTGAGCTGCTCAGGAAATGAGGCATGGTTGAACAAAAAAACACCACAGATCCGCAA
CCGTTGAACCCTGCAAAGGC
Conservation Information
Conserved circRNAs osi_circ_007776* osi_circ_017952 osi_circ_007777* osi_circ_017954
PMCS 0.307007722
Functional Information
Coding potential Y
Potential coding position 22085558-22084078(+)
Potential amino acid sequence MVEQKNTTDPQPLNPAKASQATGDQMVHGSHSYGCCGCRVHGKKCSGEICVPQILIEALRKSPN
IFYGV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017