Detail information of Os11g0518900_circ_g.2


General Information
CircRNA Name Os11g0518900_circ_g.2
ID in PlantcircBase osa_circ_009429
Alias NA
Organism Oryza sativa
Position chr11: 18644427-18644574  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os11g0518900
Parent gene annotation Conserved hypothetical protein. (Os11t0518900-01);Hypothetical c
onserved gene. (Os11t0518900-02)
Parent gene strand +
Alternative splicing Os11g0518900_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered Os11t0518900-01:1
Os11t0518900-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGGTCAAATGGATGTTCTTGTAGAGATAGCTCATCAGTTAGCTTTTGCAGAAGAGAGAAAAA
ACTACGAGGTgtgagctgcccttacaccctccaaaagtccctctctgtttcttactgtgcatct
tgtataatatttataatata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGCTGCCCTTACACCCTCCAAAAGTCCCTCTCTGTTTCTTACTGTGCATCTTGTATAATAT
TTATAATATACAGGGTCAAATGGATGTTCTTGTAGAGATAGCTCATCAGTTAGCTTTTGCAGAA
GAGAGAAAAAACTACGAGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.1465183
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017