Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020038_circ_g.2 |
ID in PlantcircBase | zma_circ_009312 |
Alias | Zm07circ00042, GRMZM2G130910_C1 |
Organism | Zea mays |
Position | chr7: 87809763-87810747 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d020038 |
Parent gene annotation |
Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-2 0specific; SET domain protein 110 |
Parent gene strand | - |
Alternative splicing | Zm00001d020038_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d020038_T004:3 Zm00001d020038_T001:3 Zm00001d020038_T005:3 Zm00001d020038_T002:3 Zm00001d020038_T007:4 Zm00001d020038_T006:3 Zm00001d020038_T003:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.104148689 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
87809863-87809765(-) |
Potential amino acid sequence |
MLFSCCSSQCECDIACTNKSFQHRPLTKTKLIKQIENVFDQLISKIEQADPDFDPRPFLKQLNV LGRYEPIKRNVYFTKRYIEDYGISCHCKPSPGSSVVCGRDCYCSMLFSCCSSQCECDIACTNKS FQHRPLTKTKLIKQIENVFDQLISKIEQADPDFDPRPFLKQLNVLGRYEPIKRNVYFTKRYIED YGISCHCKPSPGSSVVCGRDCYCSMLFSCCSSQCECDIACTNKSFQHRPLTKTKLIKQIENVFD QLISKIEQADPDFDPRPFLKQLNVLGRYEPIKRNVYFTKRYIEDYGISCHCKPSPGSSVVCGRD CYCSMLFSCCSSQCECDIACTNKSFQHRPLTKTKLIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |