Detail information of Zm00001d005257_circ_g.3


General Information
CircRNA Name Zm00001d005257_circ_g.3
ID in PlantcircBase zma_circ_001139
Alias circ484
Organism Zea mays
Position chr2: 166025713-166026094  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d005257
Parent gene annotation Sulfate transporter 4.1 chloroplastic
Parent gene strand -
Alternative splicing Zm00001d005257_circ_g.1 Zm00001d005257_circ_g.2 Zm00001d005257_circ_g.4 Zm00001d005257_circ_g.5 Zm00001d005257_circ_g.6 Zm00001d005257_circ_g.7 Zm00001d005257_circ_g.8 Zm00001d005257_circ_g.9 Zm00001d005257_circ_g.10 Zm00001d005257_circ_g.11 Zm00001d005257_circ_g.12
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d005257_T001:2
Zm00001d005257_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGATAATTTTATTCTTTGCAAAATTAGTATGCAATAAGAAGTCAAAATGCCCTTACCAGGCC
AGTAACAGCAGAAATCACAATTGCAGCCAATGCACAccccaacaaggacgccaatctcaatgcc
aaaaactaatgttgtgataaatgtgattgcccataaaaagaaatctttcttatcaatagcccac
aagaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCAACAAGGACGCCAATCTCAATGCCAAAAACTAATGTTGTGATAAATGTGATTGCCCATAA
AAAGAAATCTTTCTTATCAATAGCCCACAAGAAGATGGCCTCTTCATAATCTACCTGAAATTAG
AAACTGATTTCTATGAGAAATCAAATGTAAAATTGTTTATATCACAACACAAGGTTTAAATACT
ACGAGAAGAGATACAAAAGAAACTAGGGCATTTATAATTTAACTAAGGCCGCATTTTACAAAAA
CACCATAAAGTTAGAACAGACAGTAAAATGATAATTTTATTCTTTGCAAAATTAGTATGCAATA
AGAAGTCAAAATGCCCTTACCAGGCCAGTAACAGCAGAAATCACAATTGCAGCCAATGCACA
Conservation Information
Conserved circRNAs NA
PMCS 0.247649411
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b