Plant Circular RNA Database

Detail information of AT2G14050_circ_g.3

			
						 General Information
					
						CircRNA Name
						AT2G14050_circ_g.3
					
						ID in PlantcircBase
						ath_circ_013294
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 5909541-5912186  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT2G14050						
					
						Parent gene annotation
						
							minichromosome maintenance 9
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G14045_circ_g.1 AT2G14045_circ_g.2 AT2G14045_circ_g.3 2_circ_igg.4 AT2G14045_circ_g.5 AT2G14050_circ_g.1 AT2G14050_circ_g.2 AT2G14050_circ_g.4 AT2G14050_circ_g.5 AT2G14050_circ_g.6 AT2G14050_circ_g.7 AT2G14050_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G14050.1:11
AT2G14050.2:11

General Information
CircRNA Name	AT2G14050_circ_g.3
ID in PlantcircBase	ath_circ_013294
Alias	NA
Organism	Arabidpsis thaliana
Position	chr2: 5909541-5912186 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT2G14050
Parent gene annotation	minichromosome maintenance 9
Parent gene strand	+
Alternative splicing	AT2G14045_circ_g.1 AT2G14045_circ_g.2 AT2G14045_circ_g.3 2_circ_igg.4 AT2G14045_circ_g.5 AT2G14050_circ_g.1 AT2G14050_circ_g.2 AT2G14050_circ_g.4 AT2G14050_circ_g.5 AT2G14050_circ_g.6 AT2G14050_circ_g.7 AT2G14050_circ_g.8
Support reads	1
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G14050.1:11 AT2G14050.2:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTGAAGCGCTTTCTTTCTTTTTCTTTCTGGAAGCATGAGAGAGCATGACCGAGCAACCATACAT
GAAGCAATGGAGCAACAAAGTATAAGCGTTGCCAAGaaaattgctttggagcatatgaagaaat
ttgaggagaagattggaattgagaagagatttatacatgttcgtataaacactagtggatctcc
tctagaac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1104
Transcript exons: 5909541-5909649,5909720-5909858,5909952-5910018,5910146-
5910320,5910457-5910556,5910790-5910887,5911032-5911097,
5911192-5911284,5911515-5911631,5911707-5911779,5912120-
5912186
AAAATTGCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATAC
ATGTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACATTCCCGAGTATTGG
CCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGATCCGGG
GCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCACATGTTTCCTA
TTTTCCCTGAGTTAGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGTCCTTCTCAGCGGTC
AAAAGCTTGTGAGGGCACAAACTTTGATCCTGTAGATGATACAGTAACACGCCATGATTATCAA
GAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGTGTTATCCCAAGGTCCATTCTAG
TCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCTGGAGATGATGTTGTTGTCTCTGGAAT
CTTGACTTCAAAATGGTCTCATGACTTGAAAGATGTTCGTTGCGACCTTGAACCTATGTTGATT
GCCAATCATGTCAGAAGAACTAATGAGCTGAAATCAGAAATCGATATATCTGATGATTTGATCG
AGAAGTTCAAGAACTTTTGGAGCCACTTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTT
ACGAGGTATCTGCCCCCAAGTCTTTGGACTCTTCACTGTTAAACTTGCAGTTGCTTTGACACTT
ATTGGAGGTGTGCAACATGTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTC
TTATTGGTGATCCAGGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAG
AGCTGTAATCACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGAT
GGAGGAGAGTGGATGTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTG
ATGAATTTGATAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCAACAAAG
TATAAGCGTTGCCAAG
						
					

						Genomic sequence
						
							AAAATTGCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATAC
ATGTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGGTGTGTGTGTGTGTATCTC
TTGTTTTCGAGTTTGTTCTGCTTCTCTTAGCTGATTTTGATTTTGACACAGAGACATTCCCGAG
TATTGGCCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGA
TCCGGGGCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCACATGT
ATGGTTATGTGTTGTGGTTGAAACTGTATATTATACATTTTGTCATCTCTTGTTCTTGTAGTAT
TGCTGATTGAGTTGATTTCTTCTATAGGTTTCCTATTTTCCCTGAGTTAGAATCAATCAACTCT
ATTGTGAAACCGCCTTTTTGTCCTTCTCAGGTTTGTCACATTTCATTCTTTGTCTAGCTAAGCT
TCTTTGCACTAGATAGTCTTCTGTTTTGCGATAACACTCTGACTAAGGTCTCTACAATTGTGTC
CTGAAGTTTAAAAATTCTCTGCGTGACAGCGGTCAAAAGCTTGTGAGGGCACAAACTTTGATCC
TGTAGATGATACAGTAACACGCCATGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTT
TTAGGTGTTGGTGTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATG
TTAAAGCTGGAGGTAAACCAGTTTGTTTGTTTTTATTCTGTGTCTTACATATTCATGATTGCGT
CAATATTATGGCTCAGTGTAACCATTCTAAACGTATCAGCATAGCTGCTCCGCCTCCTGATATA
ACATATTTCTTTTCATGCAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCAT
GACTTGAAAGATGTTCGTTGCGACCTTGAACCTATGTTGATTGCCAATCATGTCAGGTAAATGG
CTTGATAATTTTGATAGAGACCTACAAATCCATTTTATTAAGGAAATCCTTACCACGTTCCTGA
AAGTTGTATGCAAAACTGGTACTAGTTTGTTTGCCTGAAACAATTATTAAGGTCTTTGATGGGA
TTCTATTTTCTCGTTTTCTTAGTTACTATTGGTCATTACAGTTTCATATTAACTCACTTTCTAC
CTTCTCTTCACCTGTTATCATGCCACTATCCAGAAGAACTAATGAGCTGAAATCAGAAATCGAT
ATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCACTTCAGAGATACCCCTTTGA
AAGGTAAAAAATCAATGTTACCTGGAAAGTATTCCGCCTATTTTTTTCGCAATTATTATGAACA
ATTATTCCCCTGCCATCGACAACTATTACGTATGTTTTTGGTAAACATTTATGCTAAATTCTTT
AATGTTTTGGGTAAGTCAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTCTTTGGAC
TCTTCACTGTTAAACTTGCAGGTATACTACTCTATGCATACTTTTTTTGTCAACATCTCTTCTC
ATTGAGTTGTCTAAATTTATTTGTATGCATGTGCAATGTATTTATATGCAGTTGCTTTGACACT
TATTGGAGGTGTGCAACATGTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTT
CTTATTGGTGATCCAGGTTGTTATCGATCACTGAGTATTATTTTTGTAATATATGCATGCCCCT
AAATTTTGGTGGAGTTCCAAATTTTTTGCTTGAACTAAATTGATTTTGAACTAGAAGAAACCTT
GCATGTGTTTTTAAGACATAAAAGGGTCGTGTACGTTTTTTTGTTACTAGATGATTGATTTATA
TATGGGAATGTTCTTTCATACAGACCTGCATTTTACATTGTTTATATCTGGCAGGCACTGGAAA
ATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTAATCACAACGGGACTAGGA
AGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAGGTAAGCTCTCTGATCTTATGT
TGTTTCCTTCGCAATACTTTTCTTTTTCATATAGTCTTATTAAGTTGTTTTCAGGAGAGTGGAT
GTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTGATGAATTTGATAGG
TACTTTCCAGATGCCAGATGGGAGAAACATCTATTATAAGAATACTTTACATTAATCCGTAGTG
TTATTTACTTTAAATTTTTGATCTTCGATGAACTTTAAGTATTCTTGTGGTCTTGGGAATTTCT
TGGCTCTTATCACAGACAAGAAGAATTCACTGGTAAAAAGTGGTCAGCCTAACTTGACAAATAT
TTTAGGAATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATCATTCCTTTTAATTGATAT
CGATCTATATTGCATTCTATTGCGTCTTCCTTTGAGAAACGTGCGTAGAACTGAAGCGCTTTCT
TTCTTTTTCTTTCTGGAAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCA
ACAAAGTATAAGCGTTGCCAAG
						
					

			
		

Sequences
Splice junction sequence	CTGAAGCGCTTTCTTTCTTTTTCTTTCTGGAAGCATGAGAGAGCATGACCGAGCAACCATACAT GAAGCAATGGAGCAACAAAGTATAAGCGTTGCCAAGaaaattgctttggagcatatgaagaaat ttgaggagaagattggaattgagaagagatttatacatgttcgtataaacactagtggatctcc tctagaac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1104 Transcript exons: 5909541-5909649,5909720-5909858,5909952-5910018,5910146- 5910320,5910457-5910556,5910790-5910887,5911032-5911097, 5911192-5911284,5911515-5911631,5911707-5911779,5912120- 5912186 AAAATTGCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATAC ATGTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACATTCCCGAGTATTGG CCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGATCCGGG GCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCACATGTTTCCTA TTTTCCCTGAGTTAGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGTCCTTCTCAGCGGTC AAAAGCTTGTGAGGGCACAAACTTTGATCCTGTAGATGATACAGTAACACGCCATGATTATCAA GAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGTGTTATCCCAAGGTCCATTCTAG TCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCTGGAGATGATGTTGTTGTCTCTGGAAT CTTGACTTCAAAATGGTCTCATGACTTGAAAGATGTTCGTTGCGACCTTGAACCTATGTTGATT GCCAATCATGTCAGAAGAACTAATGAGCTGAAATCAGAAATCGATATATCTGATGATTTGATCG AGAAGTTCAAGAACTTTTGGAGCCACTTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTT ACGAGGTATCTGCCCCCAAGTCTTTGGACTCTTCACTGTTAAACTTGCAGTTGCTTTGACACTT ATTGGAGGTGTGCAACATGTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTC TTATTGGTGATCCAGGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAG AGCTGTAATCACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGAT GGAGGAGAGTGGATGTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTG ATGAATTTGATAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCAACAAAG TATAAGCGTTGCCAAG
Genomic sequence	AAAATTGCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATAC ATGTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGGTGTGTGTGTGTGTATCTC TTGTTTTCGAGTTTGTTCTGCTTCTCTTAGCTGATTTTGATTTTGACACAGAGACATTCCCGAG TATTGGCCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGA TCCGGGGCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCACATGT ATGGTTATGTGTTGTGGTTGAAACTGTATATTATACATTTTGTCATCTCTTGTTCTTGTAGTAT TGCTGATTGAGTTGATTTCTTCTATAGGTTTCCTATTTTCCCTGAGTTAGAATCAATCAACTCT ATTGTGAAACCGCCTTTTTGTCCTTCTCAGGTTTGTCACATTTCATTCTTTGTCTAGCTAAGCT TCTTTGCACTAGATAGTCTTCTGTTTTGCGATAACACTCTGACTAAGGTCTCTACAATTGTGTC CTGAAGTTTAAAAATTCTCTGCGTGACAGCGGTCAAAAGCTTGTGAGGGCACAAACTTTGATCC TGTAGATGATACAGTAACACGCCATGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTT TTAGGTGTTGGTGTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATG TTAAAGCTGGAGGTAAACCAGTTTGTTTGTTTTTATTCTGTGTCTTACATATTCATGATTGCGT CAATATTATGGCTCAGTGTAACCATTCTAAACGTATCAGCATAGCTGCTCCGCCTCCTGATATA ACATATTTCTTTTCATGCAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCAT GACTTGAAAGATGTTCGTTGCGACCTTGAACCTATGTTGATTGCCAATCATGTCAGGTAAATGG CTTGATAATTTTGATAGAGACCTACAAATCCATTTTATTAAGGAAATCCTTACCACGTTCCTGA AAGTTGTATGCAAAACTGGTACTAGTTTGTTTGCCTGAAACAATTATTAAGGTCTTTGATGGGA TTCTATTTTCTCGTTTTCTTAGTTACTATTGGTCATTACAGTTTCATATTAACTCACTTTCTAC CTTCTCTTCACCTGTTATCATGCCACTATCCAGAAGAACTAATGAGCTGAAATCAGAAATCGAT ATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCACTTCAGAGATACCCCTTTGA AAGGTAAAAAATCAATGTTACCTGGAAAGTATTCCGCCTATTTTTTTCGCAATTATTATGAACA ATTATTCCCCTGCCATCGACAACTATTACGTATGTTTTTGGTAAACATTTATGCTAAATTCTTT AATGTTTTGGGTAAGTCAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTCTTTGGAC TCTTCACTGTTAAACTTGCAGGTATACTACTCTATGCATACTTTTTTTGTCAACATCTCTTCTC ATTGAGTTGTCTAAATTTATTTGTATGCATGTGCAATGTATTTATATGCAGTTGCTTTGACACT TATTGGAGGTGTGCAACATGTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTT CTTATTGGTGATCCAGGTTGTTATCGATCACTGAGTATTATTTTTGTAATATATGCATGCCCCT AAATTTTGGTGGAGTTCCAAATTTTTTGCTTGAACTAAATTGATTTTGAACTAGAAGAAACCTT GCATGTGTTTTTAAGACATAAAAGGGTCGTGTACGTTTTTTTGTTACTAGATGATTGATTTATA TATGGGAATGTTCTTTCATACAGACCTGCATTTTACATTGTTTATATCTGGCAGGCACTGGAAA ATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTAATCACAACGGGACTAGGA AGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAGGTAAGCTCTCTGATCTTATGT TGTTTCCTTCGCAATACTTTTCTTTTTCATATAGTCTTATTAAGTTGTTTTCAGGAGAGTGGAT GTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTGATGAATTTGATAGG TACTTTCCAGATGCCAGATGGGAGAAACATCTATTATAAGAATACTTTACATTAATCCGTAGTG TTATTTACTTTAAATTTTTGATCTTCGATGAACTTTAAGTATTCTTGTGGTCTTGGGAATTTCT TGGCTCTTATCACAGACAAGAAGAATTCACTGGTAAAAAGTGGTCAGCCTAACTTGACAAATAT TTTAGGAATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATCATTCCTTTTAATTGATAT CGATCTATATTGCATTCTATTGCGTCTTCCTTTGAGAAACGTGCGTAGAACTGAAGCGCTTTCT TTCTTTTTCTTTCTGGAAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCA ACAAAGTATAAGCGTTGCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.171388051

Conservation Information
Conserved circRNAs	NA
PMCS	0.171388051

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5909559-5912183(+)
						
					

						Potential amino acid sequence
						
							MKKFEEKIGIEKRFIHVRINTSGSPLERSPETFPSIGRVRVKHRGILMMLKGTVIRSGAVKMYE
GEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQRSKACEGTNFDPVDDTVTRHDYQEIKIQE
NTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGILTSKWSHDLKDVRCDLEPMLIANHVRR
TNELKSEIDISDDLIEKFKNFWSHFRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQH
VDASGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWML
EAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQSISVAKKIALEHMKKFEEKIGIEKRFIH
VRINTSGSPLERSPETFPSIGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPI
FPELESINSIVKPPFCPSQRSKACEGTNFDPVDDTVTRHDYQEIKIQENTQVLGVGVIPRSILV
VLKDDLVDNVKAGDDVVVSGILTSKWSHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIE
KFKNFWSHFRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLL
IGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCID
EFDSMREHDRATIHEAMEQQSISVAKKIALEHMKKFEEKIGIEKRFIHVRINTSGSPLERSPET
FPSIGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFC
PSQRSKACEGTNFDPVDDTVTRHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDV
VVSGILTSKWSHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSHFRDTPLKG
RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLIGDPGTGKSQFLKFAA
KLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEA
MEQQSISVAKKIALEHMKKFEEKIGIEKRFIHVRINTSGSPLERSPETFPSIGRVRVKHRGILM
MLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQRSKACEGTNFDPV
DDTVTRHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGILTSKWSHDLKD
VRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSHFRDTPLKGRNAILRGICPQVFGLF
TVKLAVALTLIGGVQHVDASGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTS
AGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQSISVAK(+)
						
					

						Sponge-miRNAs
						
							ath-miR5998a 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5909559-5912183(+)
Potential amino acid sequence	MKKFEEKIGIEKRFIHVRINTSGSPLERSPETFPSIGRVRVKHRGILMMLKGTVIRSGAVKMYE GEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQRSKACEGTNFDPVDDTVTRHDYQEIKIQE NTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGILTSKWSHDLKDVRCDLEPMLIANHVRR TNELKSEIDISDDLIEKFKNFWSHFRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQH VDASGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWML EAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQSISVAKKIALEHMKKFEEKIGIEKRFIH VRINTSGSPLERSPETFPSIGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPI FPELESINSIVKPPFCPSQRSKACEGTNFDPVDDTVTRHDYQEIKIQENTQVLGVGVIPRSILV VLKDDLVDNVKAGDDVVVSGILTSKWSHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIE KFKNFWSHFRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLL IGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCID EFDSMREHDRATIHEAMEQQSISVAKKIALEHMKKFEEKIGIEKRFIHVRINTSGSPLERSPET FPSIGRVRVKHRGILMMLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFC PSQRSKACEGTNFDPVDDTVTRHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDV VVSGILTSKWSHDLKDVRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSHFRDTPLKG RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLIGDPGTGKSQFLKFAA KLSNRAVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEA MEQQSISVAKKIALEHMKKFEEKIGIEKRFIHVRINTSGSPLERSPETFPSIGRVRVKHRGILM MLKGTVIRSGAVKMYEGEKMYRCRKCKHMFPIFPELESINSIVKPPFCPSQRSKACEGTNFDPV DDTVTRHDYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGILTSKWSHDLKD VRCDLEPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSHFRDTPLKGRNAILRGICPQVFGLF TVKLAVALTLIGGVQHVDASGTKVRGESHLLLIGDPGTGKSQFLKFAAKLSNRAVITTGLGSTS AGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQSISVAK(+)
Sponge-miRNAs	ath-miR5998a
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT2G14050_circ_g.3

Address

Any questions?

Supported by