Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os05g0182600_circ_g.4 |
| ID in PlantcircBase | osa_circ_026880 |
| Alias | Os_ciR10243 |
| Organism | Oryza sativa |
| Position | chr5: 4966608-4969778 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Os05g0182600 |
| Parent gene annotation |
Similar to SSRP1 protein. (Os05t0182600-01) |
| Parent gene strand | + |
| Alternative splicing | Os05g0182600_circ_g.1 Os05g0182600_circ_g.2 Os05g0182600_circ_g.3 |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os05t0182600-01:11 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.130446576 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
4966714-4969775(+) 4969709-4966704(+) |
| Potential amino acid sequence |
MAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGN MLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPG DENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY SSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKD RLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPK PPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHL KILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDESDEENPGQFKLYSGGLAWKRQG GGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEK QLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDS LMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELH LSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVV QRDLTLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKA EDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDESDEEN PGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDIS SLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDV VLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGSSEEAVVTF DGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKG QTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPS TFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYF DLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPH LERIRNQTGDDESDEENPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVST KEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFE VSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQA ILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSN NPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKDRLENSYQGLIHEV FSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYV EFERHGAGGASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAG GVTAVLQSTDDDAVDPHLERIRNQTGDDESDEE(+) MMMLLILIWSGSEIRLAMMRVMKRTLASLNFIREDLHGRGKVEERPLRLKSLISLL*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015 |