Detail information of Os05g0182600_circ_g.4


General Information
CircRNA Name Os05g0182600_circ_g.4
ID in PlantcircBase osa_circ_026880
Alias Os_ciR10243
Organism Oryza sativa
Position chr5: 4966608-4969778  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0182600
Parent gene annotation Similar to SSRP1 protein. (Os05t0182600-01)
Parent gene strand +
Alternative splicing Os05g0182600_circ_g.1 Os05g0182600_circ_g.2 Os05g0182600_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0182600-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCGTTACAGCTGTTCTTCAGAGCACTGATGATGATGCTGTTGATCCTCATCTGGAGCGGATC
AGAAATCAGACTGGCGATGATGAGAGTGATGAAGAGaaccctggccagtttaaactttattcgg
gaggacttgcatggaagaggcaaggtggaggaaagaccattgaggttgaaaagtctgatatcac
ttctgtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACCCTGGCCAGTTTAAACTTTATTCGGGAGGACTTGCATGGAAGAGGCAAGGTGGAGGAAAGA
CCATTGAGGTTGAAAAGTCTGATATCACTTCTGTGACATGGATGGCAATCCCCAGATCCTATCA
GCTTGGTGTTTCAACAAAGGAGGGCCTCTTCTACAGGTTCTTTGGCTTCCGTGAACAGGTAATA
CTTCCTCCTGTTTTTCCTAAGAAAATTAGGTCTTCCCAAACGTGTATGTTTCTCATAGATAACT
TTTATTGAGCTAAGATTTTTCTTCTAATTTTTAGGATATCAGTTCATTGACTAACTTCATGGAA
AAGAACATGAGAATCACACCAGAGGAGAAGCAGCTTTCTGTTGGTGGACATAATTGGGGCGGAA
TTGAAATCAATGGTTAGCCAAATTCTCTATATTATTCCGTTGCTCCATTGCCTTTCTGCAACGT
TTGGTAGTTTGATTGCTTTCCATGTTATTTCCATTTCAGGCAATATGCTTAGCTTTAATGTTGG
TTCAAAGGAAGCATTTGAAGTCTCTCTAGCAGACGTAGCACAAACTCAGATGCAAGGAAAAACA
GATGTTGTTCTGGAGTTTCATGTGGATGATACTACTGGTGGTAATGAGGTATGTGGTTTATCCA
GATATACATTTCTCTGCATCCAATTTCGCCCATATTTTATTAGATGCTACTTTTCTGTTTGTTA
GGTGCAATTGGTTATAAGTAATCAATTTATGTTTATCAATCTGAAGAAATGTGGATGTAACAAT
TGTACAAGCTATCTGTTACATTTCAGTGTCATGTATTATTAGCTACTCAACTGTCTGCCTTGTA
ATTAAAGAGTGATTTTACTGTCCTGCTTTTTCATTCTCATTTGATGGTATTGCAAGTAACACAC
TCCCATTGTTAGAGAAAAACCATTTCATAAAATTTTGGGGTCTTTATTTGTGCTGAAGGGCATA
TTGATCATTGTTTTCCACCCTACTACATATTTTGGAGGGTCTTTATTTGTGCTCAGAATATTAT
TAAGGTAGCTAAGCTAATCGTTGACAAAAAAAAAGGACAGCTAATTTCAACTTCCTTTCCTTCT
TTTAAATGTAGAAAGATTCATTGATGGATTTAAGCTTTCATGTACCAACTTCAAATACTCAATT
CCCTGGAGATGAGAATCGTCCTTCAGCTCAGGTGAGTTTGCTCAACAAGCATGCAAGATGGACA
ACATACACATGATTTTATTGTGCAAATGGTGAAATCCTCTCCTTTTTTTAGGTTTTATGGCAGG
CTATCTTGAATAAGGCTGATGTTGGCTCATCAGAGGAAGCTGTTGTTACATTTGATGGAATTGC
TATTCTTACTCCAAGGTGGGTAAATCATATAACCATAGAGACTAGACTTTTTAGAAATAAGGAC
ATCATTCAATGTTATTGTTTTCAATTTTCTGGAATAGCTAACTTCTCCTTTTCTATTCAGAGGT
CGATACAGTGTTGAACTTCATCTGTCATTCTTACGACTCCAAGGACAAGCTAATGATTTCAAAA
TTCAATATAGCAGTATTCTTCGCCTCTTTGTTTTACCAAAGGTTCTGCCCCTTTTATATTTTTA
TTATGCTGTACTTGTTGTTAACTTTGTATCTGACAAAAAATCCTATGACTTTTCACCTTGGCAG
TCAAATAATCCTCATACCTTTGTGGTTATCACTCTTGATCCACCAATTCGCAAAGGACAGACAT
TATATCCTCACATTGTTATTCAGGTGTTGTATTAGAATTCAATTTGATACTAACTTGGTTACAG
TTTACGGTAACCTTCCAATATGCATTTGGTAACCATTTTCTGTATTTATGAATAGTTTGAAACT
GAAGCAGTCGTTCAAAGGGATCTGACATTAAGTGATGAGGTTTTGGCTGAAAAGTACAAGGATA
GACTGGAGAACTCTTACCAGGTGATGTATTTTGTTTGCGTTCAATCAAGTCTGACATTCTTCAT
CTAAAAAGTGGATCCTAATTCCCGGCTCATGTAGTTTTGCATTTCTTTCTACATCTGAGCATCT
GTAGAACAAAAAAAAAAGTAGTTTGGGGGTGTGAATCATTTTAAATAACTGCTTCCAGCAATGT
TATTTGTTCTTGTTTGTTTTAGTTTCTTGTTTGTAGTCATATGCTCTGAGCTGTATTTATTGTG
GTAATGTGCTGCTGGATGCTTGCAACTCCAGGAATCATCAGTGCACTGATTCCCAAACTTGTGA
TTCATCCGTTTATCACTGAATTGCTTGTTTTTTTTCTATCTACTCATGACTCCTGTTTGACTGA
ATTGCACAAGCTGCTATTGATGTGATGAACTGCTTCTGTGGCATTACTGCCATTGAGTCTATCA
TTATGTATTCCTTTGTGTTTGCAACTTTGCATGAGTTATAGGGTCCTATAGCTTTTGCTCATTT
GCTATTTTTAACTCCTGATAGACTAATAACAAACTCACAGAAAGTATTTGATTTATCTATAGGG
TCTGATACATGAAGTGTTCTCCAAGGTCCTTCGTGGCCTATCTGGTGCTAAAGTTACGAGGCCA
AGCACGTTCCGCAGTTGTCAAGATGGATATGCAGTGAAATCATCACTCAAAGCTGAAGATGGAT
TGCTCTATCCGCTGGAGAAGGGCTTCTTCTTTCTACCAAAGCCCCCAACACTCATTCTGCATGA
GGAGGTCTGTTTTCTACACTGCTGAGATGATTGATAATTCCATCCATTTGTCCTGTTTTAAGCT
GTAGCTCTTTATGGCAGATTGAGTATGTTGAATTTGAGCGACATGGTGCTGGGGGTGCTAGTAT
CTCATCTCACTATTTTGATCTCCTGGTCAAGCTGAAAAATGATCAAGAACATCTATTCAGAAAT
ATCCAAAGAAATGAATACCATAATCTCTTCAATTTCATCAGGTCTGTGCTTTATTTAGCTGATT
CCACCATCATTGGTTTACTTGCCTTTTTGAATAGAAGTATGAAGCTGATAAGTGCCTTTTTGTA
ATCCCTTTCAAGTGGCAAGCATTTGAAAATCTTGAATCTTGGAGAAGCTCAAGGTAGAGCTGGT
GGCGTTACAGCTGTTCTTCAGAGCACTGATGATGATGCTGTTGATCCTCATCTGGAGCGGATCA
GAAATCAGACTGGCGATGATGAGAGTGATGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.130446576
Functional Information
Coding potential Y
Potential coding position 4966714-4969775(+)
4969709-4966704(+)
Potential amino acid sequence MAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGN
MLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPG
DENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQY
SSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKD
RLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPK
PPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHL
KILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDESDEENPGQFKLYSGGLAWKRQG
GGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEK
QLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDS
LMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELH
LSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVV
QRDLTLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKA
EDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI
QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDESDEEN
PGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVSTKEGLFYRFFGFREQDIS
SLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFEVSLADVAQTQMQGKTDV
VLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQAILNKADVGSSEEAVVTF
DGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKG
QTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPS
TFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYF
DLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPH
LERIRNQTGDDESDEENPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSYQLGVST
KEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLSFNVGSKEAFE
VSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFPGDENRPSAQVLWQA
ILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSILRLFVLPKSN
NPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSDEVLAEKYKDRLENSYQGLIHEV
FSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYV
EFERHGAGGASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAG
GVTAVLQSTDDDAVDPHLERIRNQTGDDESDEE(+)
MMMLLILIWSGSEIRLAMMRVMKRTLASLNFIREDLHGRGKVEERPLRLKSLISLL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015