Detail information of AT5G37130_circ_g.3


General Information
CircRNA Name AT5G37130_circ_g.3
ID in PlantcircBase ath_circ_041293
Alias NA
Organism Arabidpsis thaliana
Position chr5: 14682258-14684996  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT5G37130
Parent gene annotation Protein prenylyltransferase superfamily protein
Parent gene strand +
Alternative splicing AT5G37130_circ_g.1 AT5G37130_circ_g.2 AT5G37130_circ_g.4 AT5G37130_circ_g.5 AT5G37130_circ_g.6 AT5G37130_circ_g.7 AT5G37130_circ_g.8 AT5G37130_circ_g.9 AT5G37130_circ_g.10 AT5G37130_circ_g.11
Support reads 13
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G37130.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATGTCTCATTTTTTTCTCCTACTCTAGGGAGGCTGCAATGGCGTTAAATTCTCTGTATTCA
GATGGTTGGTTTGCTCTTGGTGCTGCTGCGTTGAAGcatttagtttttgctagattgctgctgt
taaagttgaaagatttgttgtttgagacaagtgcctctgaaacttttcaacttaggagtatttc
atggtggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTAGTTTTTGCTAGATTGCTGCTGTTAAAGTTGAAAGATTTGTTGTTTGAGACAAGTGCCT
CTGAAACTTTTCAACTTAGGAGTATTTCATGGTGGCTTGTCAGAGTCTTACTTATTCATCAAAG
AGTTCTTCACGAGCCATCTTCATCTTTGTTTGAGATGTTGCAAGTTTACATGGCCGAAGCTCTA
GACCATTTTGGAGCATTGGAAAAAGTCGAAAGCTACTGGGGTGCCAAGTTGCTACAAGACGAAG
CTTCATCCATCACGTCAATCATCCATCTGGAAGCATGTGTACTGCAATATATATATCGAAGGAT
TGACCCTTTTCGGTAAGTTAATGGTTTTGTCTTTGCCTACATCTTACATGTTTTATAGCTTTTT
GTGACAAGATTACTTTGCTTTCGCCTTATGGTTCCTTTTGCGGCTCATGTAGTTACGAAATTGA
GCTTGTATGGCACATGTGTATATAGTTGTTACTTTTCTCATTTATGATACCTATTACATACCAT
TTCCTACTCTCCTGCTTTAGTATATTGGTCTTGATTCGGAGTAAATTTGTCAGGTTGCAGCTTG
AATCTGCTAAAGCAGCAGCAGGGCTAGAGTTCTCTGTTACTGGGGCTCTGGGATTTCGTACTAT
TCACCAAGTAAGCTATGAGATATATTTTGTCTGTTATATAGATTCAGCTATGTTATTCTAATCT
CCTCTGATCTTGCTATATAGGTAGTGCCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTC
ATCCAATGGGGCTGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGGAGCTTGGGAA
GGTGAAACACCTCAAGTGTTTATGACTCCCAAACTAGTGAACAACGAGAGTGAAGCTGGCACAG
ATTCAGTGCCCTTAAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAATTGAAAG
GGGTAGTCGGCACGATGCAATGCAAAGTAAGTGAACTCGAATTCAAAAGTATTTGCAATGTTTA
TTTCTCAAAACCGAGCTTAGGTGGAAAGATAGAGAAGAACATTAACAATTCTGCCTACAATTAA
GTCACTAGGCATTAGTTGTGACTGCAATTCAAGAACCTTGAATAGAGAAGATGCAATTGTCTAC
TCTTGTTTCTGTGTCGACTAGTTTCACTCACTTGTGTTGAATCTAATACCCTTTTTTTCTTTCT
GCAGGTTGGGATATGGCTCCATATATTGAGGCAATTGATTCTCAAAAGTCAACCTATTTTGTTG
TAAGTCTTCAGTCTTTCGGTTAATTAAAGTGACTGAATTTAAATGTTGATGTATGGAGCTGTTC
GTTTTTCATTTTGTGTCACAACCTATCCAACTAAAACAAACTGACTGACTTTTTGTCCTTCCAA
CATAGAATAGCTACGGTGTTTTTGTGACTTATTGCGTGTTCGATGGGAATCATCTCGATATCGT
ACAAGGGAACGCGCCCGGGATATGATGGATAAGCTGGTATGTGTGAACAGCCCTTATACTTATC
AATTTGGTTTTCTTTTTGGATTGTATATCCTCCTGGCTCAAACACTCATTTTGTAGCATTATTT
CATTCCGTCCTTTATTGTAGCTCTGATAGTTTTCCTTTATCAGGTTGGAGCTATTAGCAAGAGC
GATCCTGGAGTATCAAATCGGATCCCTTTATGCTATGCAGTGTATCTTCCTACTATTCCTGCTT
TGAGAAAGTAGGATATTCTGTTTATGTGCATGTATAGATATCATTTTCGGGTTTCTCTGCGGTC
TTATTTATCGTTCCATTTTGATTTTATCAATAGGGAATATGGTGAGCTTCTGGTGAGTTGTGGT
TATGTTGGGGAAGCAATCACAATATTTGAGAGCCTGGAATTGTGGGATAATCTAATTTACTGCT
ACTGGTAAACTAAATTATGAATACTGCGTCTGTAATGGAATTCAGCTTTCGCTTGTTTTGATTT
TATGAATATGGCTTTCATCTTCTGTTGCAAAACTTATTATATTCTTGTGTAATTTTAGCTCCAT
GGGAAAGAAATCAGCGGCTGTAGATCTCATCAATGCACGGCTTCTTGAACGCCCAAATGACCCA
AGATTATGGTAATCTATTCTCTGATAGTACTCTTTGTCTGTTCTTTTCCTGTTGCTTATATATC
GTAATTATTAAATGGTTGTGAAGTGCCACAATTATCTACTTTGAATGTACTCTTAATCTATGTG
CGGATATTTCTTTGATCACTAGGAAGTTATTATTGTATCATAACATTAAAGTAAATTTGATGAT
AAAAATTGGTTTCAGGTGTTCATTGGGTGATGTTACGATTTCCGATTCCTGTTATGAAAAAGCC
CTGGAAGTTTCAAATGACAAATCAGTTCGTGCTAAGGTAGTTTGAGATACAAAACAGAAAAATC
TTTTTTTGTCCATCTCTTTTAGTCCATGCTCTAATTATCTTCATCTTGCAGCGGGCTCTTGCTC
GAAGCGCATACAATCGCGGTGATTTTGAGAAGTCGAAGATACTGTGGTATGTTTGAACATTTTG
GTTCTTTCCTTATTAATTTTTTCTTTCTCTACAAGGGAAATGGAGTTATGAACTTGGCCCTTCA
GGCTGATTTACTTGTGAGATGTCTCATTTTTTTCTCCTACTCTAGGGAGGCTGCAATGGCGTTA
AATTCTCTGTATTCAGATGGTTGGTTTGCTCTTGGTGCTGCTGCGTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109292056
Functional Information
Coding potential Y
Potential coding position 14682420-14684993(+)
Potential amino acid sequence MLQVYMAEALDHFGALEKVESYWGAKLLQDEASSITSIIHLEACVLQYIYRRIDPFRLQLESAK
AAAGLEFSVTGALGFRTIHQVVPKAQMVLVANTSSSNGAVRLASEKADVGPYGAWEGETPQVFM
TPKLVNNESEAGTDSVPLKPVEQALILAQCLLIERGSRHDAMQSWDMAPYIEAIDSQKSTYFVL
RCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSNRIPLCYAVYLPTIPALRKEYGE
LLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSAAVDLINARLLERPNDPRLWCSLGDVTIS
DSCYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALKHL
VFARLLLLKLKDLLFETSASETFQLRSISWWLVRVLLIHQRVLHEPSSSLFEMLQVYMAEALDH
FGALEKVESYWGAKLLQDEASSITSIIHLEACVLQYIYRRIDPFRLQLESAKAAAGLEFSVTGA
LGFRTIHQVVPKAQMVLVANTSSSNGAVRLASEKADVGPYGAWEGETPQVFMTPKLVNNESEAG
TDSVPLKPVEQALILAQCLLIERGSRHDAMQSWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWE
SSRYRTRERARDMMDKLVGAISKSDPGVSNRIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAI
TIFESLELWDNLIYCYCSMGKKSAAVDLINARLLERPNDPRLWCSLGDVTISDSCYEKALEVSN
DKSVRAKRALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALKHLVFARLLLLKLKD
LLFETSASETFQLRSISWWLVRVLLIHQRVLHEPSSSLFEMLQVYMAEALDHFGALEKVESYWG
AKLLQDEASSITSIIHLEACVLQYIYRRIDPFRLQLESAKAAAGLEFSVTGALGFRTIHQVVPK
AQMVLVANTSSSNGAVRLASEKADVGPYGAWEGETPQVFMTPKLVNNESEAGTDSVPLKPVEQA
LILAQCLLIERGSRHDAMQSWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARD
MMDKLVGAISKSDPGVSNRIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNL
IYCYCSMGKKSAAVDLINARLLERPNDPRLWCSLGDVTISDSCYEKALEVSNDKSVRAKRALAR
SAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALKHLVFARLLLLKLKDLLFETSASETFQ
LRSISWWLVRVLLIHQRVLHEPSSSLFEMLQVYMAEALDHFGALEKVESYWGAKLLQDEASSIT
SIIHLEACVLQYIYRRIDPFRLQLESAKAAAGLEFSVTGALGFRTIHQVVPKAQMVLVANTSSS
NGAVRLASEKADVGPYGAWEGETPQVFMTPKLVNNESEAGTDSVPLKPVEQALILAQCLLIERG
SRHDAMQSWDMAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKS
DPGVSNRIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSA
AVDLINARLLERPNDPRLWCSLGDVTISDSCYEKALEVSNDKSVRAKRALARSAYNRGDFEKSK
ILWEAAMALNSLYSDGWFALGAAALK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017