Detail information of Os04g0563700_circ_g.1


General Information
CircRNA Name Os04g0563700_circ_g.1
ID in PlantcircBase osa_circ_024870
Alias Os_ciR9508
Organism Oryza sativa
Position chr4: 28219332-28219480  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0563700
Parent gene annotation Cyclin. (Os04t0563700-01)
Parent gene strand -
Alternative splicing Os04g0563700_circ_g.2 Os04g0563700_circ_g.3 Os04g0563700_circ_g.4 Os04g0563700_circ_g.5 Os04g0563700_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os04t0563700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGCTGTGTAAACTGCAGCAGCAGCAAGAAGCGAAGGTCGGTACTTGAGCATTTGGTATTCCA
CCAGGGAGAGagaagctgctctccggtatatctactatgtagttcgcaggtctttgtccactgc
tggcaacgagtgagagcacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAGCTGCTCTCCGGTATATCTACTATGTAGTTCGCAGGTCTTTGTCCACTGCTGGCAACGAG
TGAGAGCACATTGTGCTGTGTAAACTGCAGCAGCAGCAAGAAGCGAAGGTCGGTACTTGAGCAT
TTGGTATTCCACCAGGGAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.202536353
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015