Detail information of BGIOSGA014597_circ_g.2


General Information
CircRNA Name BGIOSGA014597_circ_g.2
ID in PlantcircBase osi_circ_014621
Alias Chr04:28128057_28130693(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26359561-26362199  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014597
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014597_circ_g.3 BGIOSGA014597_circ_g.4 BGIOSGA014597_circ_g.5 BGIOSGA014597_circ_g.6 BGIOSGA014597_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014597-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCCCAAGTGGCAACCAGGCAAACAACCTGAACTTTCAGTTGCACCAGATTCCACAAGACTTC
TAAGAGTGTCCCTCTCTATGGGTGCACAAGTACCATcctggaatcagtggattcgcgcttatac
atatccgcgaacaacttaagctccttattagtttgcttcagatcagaaatctacagggttttgg
tttcaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGAATCAGTGGATTCGCGCTTATACATATCCGCGAACAACTTAAGCTCCTTATTAGTTTGC
TTCAGATCAGAAATCTACAGGGTTTTGGTTTCAATATGTCAAATTATCATGGGAGGACAAATTC
CTGCAATAGCTAAACAAAACACCTTAATGAAGAGAAAAAATAAGCTGAGTCTAAACAAACAAGA
TACCACTGATTGAAGTTGTGTTATATCAGATCCCGCACGGGCAGATCTGCATGATGCTTCTTCA
TTATCACGTTCCTATAAAACAAAATAAACAGCCTGACACATTGGCGAATCAATGCCATAACACT
TGCGAGTCATATGTGCAAGCCAATAACAAGCAATTTACCTTTCTGGACAGAATGCGAGAAAGTG
AATGGACTTCTGCTCGCAAAGAATTCAACTCCAAGGAAGCCTCCTTGTGTTTGGTCATTTCACT
CTGCATCGCGCCCATTTCCCTTGGTATCGATGACACTAAAGCTTTAAATTTTGTAATAACTTGA
TTCCGACCTGACAAGTGCAAACAATTCCTTATTACCTGCTTTAGCAAGACAAGTTTGAAAGTTA
CTCTTGGTAAAGTGAATAGTAACTACTGCACCAGGTTCTCTTGAAGCCTCTTCAAGTTTGAGAA
TAAGCATGTTTTTTTCATCACGTAGTTTCTGAATATCCTTCTTGAGATCAGCAATGCTAGACTC
ACAATATGTAGAAACCCTCTCAGGAATCTCAGCCAGATCAACTTTCAAATTAAATTGCCTTTCT
TGCCACACGAACTTATCCTTATCAACCTGAAACATATCAAATAGGAATTCAACAAAAGATCAAA
TGCTCTAGCGAGACATTTTTGCTATACAACTCTGGAATCCAACAAATCCACTGACCAGTAACCA
CCTGTAATTTCTCTAATAATGTCTGGTAGTGATCCAATTCTGCTTGTGACTTCTGAAGTCGATC
ATTAACAAGCTGAAAAGCTTTTGAAGAACGAATGCTCTTGAAATCCATCAAGATATTCTGGAGG
AGATTAAAAACACACACACAAAGTTAGTCATACAGGTTCTGATACTAAAAAATTCTCCCATGAA
ATAAATATCAAGCATGGGCCTTCAAGGCTAAGCAAGGATGCATTCTGTGCTTGACCAATCAACA
AACCTGAAAAGTTGCTATTTTGTTCAAAATTTCAATTCTCTCTTCATGTAATCTCTTAATTTCC
ACCAACCGCTTTGAAATCAATTCCTGGTTGATAATTGGGTCAGATCATACATATCACAGGTACT
CCCTCCGGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATC
TAGACATATATATCTATCTAGATTCGATTAACATCAATATGAATGTGGGAAATGCTAGAATGAC
TTACATTGTGAAACGGAGGAAGTAGTAATTTGGAACTTTAAAAATGAACGATGGCAGTTACCGA
TAATTCCTTGTGAGTAGCTTCAAGATCCTGCATCTCTCTTTGTTTATCTCTGACCTTATCTTCA
GGCATACTTTTGTTTCCTAATGTAGGATATGGGATTCGAGCTCCTTGTGTATTATCTCTTTGAG
CTTTAAGTGCTGCCAGTTTGTAGTTAGTTTCTTCCAACTCAGAAGCAGCACTGGCCAACTCCTC
TTGACAAAGTAAACCAAAACATCTGGTTAGTTTTACCCAATGTATTAGGACAACGTATCTAGGT
AAAAAAATGTATAGGGAAAATATGGTACAAGTCTGAAGCGCTGGCGCAGTAAATATAAGAGTAC
TGCAACAGTACAGCCTATTATCGCAAGAATGCTCTCCAGAAGATTGCTGGTTAATGCGTAGGGA
GGATAGATAGGAGTTGATGGCAACATGTTTGATAATTCAAGATGTATAGCAGGTCTCAAATGTT
GCGAAACATGTTCCTTTAAATGGCATGGATGCTTATTTGAAAGTTAAAACAACTGTAAAGAAAC
ATCAGCACAATCTCTAAACAAGATACCTTTTAGACGTCTATGTTCAGCTCTTTTTCGGGCACTG
GAATCTCTTTGATTTTGATAATCCTCTGCTAACTGCTTGTGCTTCAACTGAAGATTACTTAATG
CTTGTACAACATTATTGAGGCTGGACAACAGGTTGCTACTAGTACTCTGTAGTTGCTTACTGCG
GTCTACAGAACATGAATGAAATTAGTACTTCTTTTGTATTAGTACAACTGAAAGCTATACTCTC
TCCGTCCAACAAAAAACGAATCTAGACTGGATGTGACACATTCTAGTACAACAAATCTAGACAG
AGATATGTCCAAATTCGTTGTACTAGGATATGTCACATCCAAAACTAGGTTGGTTTTTTATGGG
TCGAAGGGAGTACTAGTTAACAGAATATATGAACTAGAAGACGAACCATTTTCTGGTAATTTAG
TGAGAGCAGCCAAAGCACACTCCTCATTTGCTTGCAAAAGATCACTTGATGGAAAAAAGATATC
CCCAAGTGCATTAGCTGTGGATAGATGTAATGGAGGGGCATCACTTCCCAAGTGGCAACCAGGC
AAACAACCTGAACTTTCAGTTGCACCAGATTCCACAAGACTTCTAAGAGTGTCCCTCTCTATGG
GTGCACAAGTACCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021