Detail information of BGIOSGA014597_circ_g.4


General Information
CircRNA Name BGIOSGA014597_circ_g.4
ID in PlantcircBase osi_circ_014623
Alias Chr04:28130064_28131570(MH63RS2), Chr04:28130064_28131570(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26361570-26363074  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014597
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014597_circ_g.2 BGIOSGA014597_circ_g.3 BGIOSGA014597_circ_g.5 BGIOSGA014597_circ_g.6 BGIOSGA014597_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014597-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCCAGCGAATTTATTTTCAAGAGCACGATACTCAAACTTGTGGGCTTCTAGTTGCTCTGAGAG
CTTTTGGTTTTTGTATTTGAGTACAGTAAAATCGAGccttttagacgtctatgttcagctcttt
ttcgggcactggaatctctttgattttgataatcctctgctaactgcttgtgcttcaactgaag
attactta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTAGACGTCTATGTTCAGCTCTTTTTCGGGCACTGGAATCTCTTTGATTTTGATAATCCT
CTGCTAACTGCTTGTGCTTCAACTGAAGATTACTTAATGCTTGTACAACATTATTGAGGCTGGA
CAACAGGTTGCTACTAGTACTCTGTAGTTGCTTACTGCGGTCTACAGAACATGAATGAAATTAG
TACTTCTTTTGTATTAGTACAACTGAAAGCTATACTCTCTCCGTCCAACAAAAAACGAATCTAG
ACTGGATGTGACACATTCTAGTACAACAAATCTAGACAGAGATATGTCCAAATTCGTTGTACTA
GGATATGTCACATCCAAAACTAGGTTGGTTTTTTATGGGTCGAAGGGAGTACTAGTTAACAGAA
TATATGAACTAGAAGACGAACCATTTTCTGGTAATTTAGTGAGAGCAGCCAAAGCACACTCCTC
ATTTGCTTGCAAAAGATCACTTGATGGAAAAAAGATATCCCCAAGTGCATTAGCTGTGGATAGA
TGTAATGGAGGGGCATCACTTCCCAAGTGGCAACCAGGCAAACAACCTGAACTTTCAGTTGCAC
CAGATTCCACAAGACTTCTAAGAGTGTCCCTCTCTATGGGTGCACAAGTACCATCTGAAAAGAG
AAGGTTTATAGTTAACCTGACAGGCAACTATGGAAAAGAATAGGAGCGGCCATCGTTAAAATGC
ATATCAAGCTCATTAACATAAATAACTTATAACTTATTACATAATCTGAAAAGTGCAGTTTTTG
CAACCAAGCAGCATTATCTTAAACATTGCCACAAGAGCAATGGACCACAAAGATGACCAGATCA
AAAGGTTTTTCCATAGTGATAATCATTTGCTACTTAAATACTCCCTCTGTCTCCTCATATAAGG
GATTTTGACATTTTGCTTGCACTGTTTGACCACTCATCTTATTCCAAAAATTTGTGCAAATATA
AAAAACGAAAAGTTGTGCTTAAAGTACTTTGGATAATAAGTCACAAAAAAACTAATTCCAAAAA
TGTTTGAATAAGACGAATGGTCAAACAGTGCAAGCAAAATGTCAAAATCCCTTATATGAGGAGA
CAGAGGGAGTAGATGGCACTCCCATATTTCAAAACCTGTCTAGGAAAATGTAGTTGGGATGTTT
TTAGAAAATAAAGGAAGTCATACCCTTTTGTACATTGTTGTGCCCTGAACCAGGGCTGGAATTA
GGAGATCCACTTTTGCAAAAAGATCTTGACTTCAGGTCTGCCACAAGCTGATCAAATAAAGGGA
TTCAGGAAGAAACATTATAAAGTCTGTCTTTTTTGGTAAAACATGCACAAAATAATAGCTTACT
TGTTCCCAAGAACTGTTGACCAAGGAAAGTGTCTCATTATGAGTCCTCTGCTTCTCTTTTAGCC
CAGCGAATTTATTTTCAAGAGCACGATACTCAAACTTGTGGGCTTCTAGTTGCTCTGAGAGCTT
TTGGTTTTTGTATTTGAGTACAGTAAAATCGAG
Conservation Information
Conserved circRNAs osa_circ_024783
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021