Detail information of Zm00001d049155_circ_g.1


General Information
CircRNA Name Zm00001d049155_circ_g.1
ID in PlantcircBase zma_circ_001629
Alias circ732
Organism Zea mays
Position chr4: 18230121-18231958  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d049155
Parent gene annotation Sec23/Sec24 protein transport family protein
Parent gene strand +
Alternative splicing NA
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d049155_T020:4
Zm00001d049155_T014:4
Zm00001d049155_T008:4
Zm00001d049155_T033:5
Zm00001d049155_T025:4
Zm00001d049155_T037:4
Zm00001d049155_T013:4
Zm00001d049155_T002:4
Zm00001d049155_T027:5
Zm00001d049155_T016:4
Zm00001d049155_T006:5
Zm00001d049155_T039:3
Zm00001d049155_T029:4
Zm00001d049155_T005:4
Zm00001d049155_T038:3
Zm00001d049155_T036:4
Zm00001d049155_T009:4
Zm00001d049155_T030:4
Zm00001d049155_T024:3
Zm00001d049155_T018:3
Zm00001d049155_T026:4
Zm00001d049155_T003:5
Zm00001d049155_T023:4
Zm00001d049155_T034:4
Zm00001d049155_T007:5
Zm00001d049155_T032:4
Zm00001d049155_T028:4
Zm00001d049155_T017:4
Zm00001d049155_T004:4
Zm00001d049155_T021:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTGATTCTTTTGTAGTTACCAACACCCAGAAGGTCAAATGAGGATAAGAGTTACTACGATA
TGCAGGAAATGGGTAGATGGTTCCACTAATACCGAGggttgggctagctgagatgaaggttgct
attgagagaacaggtggccttgttgtcttgtctgaaagttttgggcattccgtattcaaggatt
ctttcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGGCTAGCTGAGATGAAGGTTGCTATTGAGAGAACAGGTGGCCTTGTTGTCTTGTCTGAA
AGTTTTGGGCATTCCGTATTCAAGGATTCTTTCAAACGCATTTTTGAGGGAGGTGAACAGTCTC
TAGGACTTTCTTTCAAGTGCGTTTTCTGCCTCTCATTTTTTCTTTCGTGTTTACATATCCTTCT
TAAGTTGATAGGTGTGGGTTGATCTGTATCATGATTTATCAATATTTACTTTTATCTCCTGGAG
AATCACAGTAGATCCCATAGCTAACACCTGAAAAAATAGAGGTAAGCCCCCTTTGGTGAACATG
GTTGGTTTGGCCCTCTTACCAGGGGGTAACTGCAAGCCCAGAAGGTTGTGATCGGTCCAGGTTT
GTTGTGTGACCTTGAGGGCGAAACCGGCTTCAGAGGTTCTGTTTGTTGGTTTGACTAAGAGCTT
CTTCTTAGTGCAATACTGCGGGGGCAGTCTTTCCCCACCGACCAAGTTGTTTCATTATTTTTAG
TTGATTTGGGTTTGTTGTTTGAGATCTAAATTATTTTGAACTGTTTGATTCAGAAAAAAATAGA
AGTTAATATTTGCCTATTTGGAATCTGGGACAAACAAAATCATGTCTTTAGGAGTGCAAATGGT
GCAAAAATAATGCAAACTATATAAAAGAAGAGCAGCAATGAGATTTCTAACCAACTTGATTATA
CTGCAGTACTGGACAGTGTGTTATGTTTTGGGTTTATTATAACCATAGGTAACATCCAATTGCT
CTATTTCTGGTCCATTGTCCATGCGAAAGAGAAACAGCTGATTATGTGAACTGCATAAATTATT
CGAGCCTGCTATTTTCTTCAATTAATTAGGTACATCAATTAGGTGATTGATTGACAGTTTTCCT
AACATAAATTAGTTGTGTTTATTACAAATTGGTAGTGGAGTATCGGGGTGGAACTGAATTGTCT
TTTGTGCATACAAAATCAATAGACTTGACATAAACCCGTACAACATGCTGGGTGATTTTTCGGG
GGCTTTTTCTGAAAGCATTTCCATGGAGAAGTTGAAGTGGCCACAAATATGTTTCTTTTGTATC
ATAGGTTTTGCTTTCATAAAGGAAACAACACTTAACAGTTAGAAGTAAAAAAGAAAACCCAATA
GAATTGCTTCTCAAAAGCCGGCAAATCCATAATTATAGAGAACCATAAGGTCCCATAAACTGGG
TGTTATTTTGACTAGTCTTATAAGCTCGCATACTACTTTATATACAAAATTCAGAACAACTGCT
TTGTCATTTTGTGATATCATTTTGATAACTCCTAAAATGCAGTTATTCATGGTTTGTTTTGTTC
TGCAGTGGCATAATTGAAATAAACTGTTCAAAAGATATTAAAGTCCAAGGTATTATTGGACCAT
GCACATCTTTGGAGAAGGTACATCTATTTGTATTGTGTTCTCAGTGTTCTTTAAATTGGTGGCA
TTAATATTAAAATTTGGCTTGATGTTTGCACCTCTCTCACAGAAAGGAGCCATGTGCTCTGACA
CAGTTGTCGGTCAAGGAAATACATCAGCATGGAAAATGTGTGGTCTCGATAGAAATACTTCTCT
TACAGTATTTTTTGATGTCTCACCGAGTGAACGATCGAGCCAGCCAGGAAACCAAAATCCCCAT
TTGTATATACAATTTGTGACAAGGTATTTACTCTTTTGCCACCTTTGATCTAAGAATGACTCAA
TATGCTAAATGTGCTGATTCTTTTGTAGTTACCAACACCCAGAAGGTCAAATGAGGATAAGAGT
TACTACGATATGCAGGAAATGGGTAGATGGTTCCACTAATACCGAG
Conservation Information
Conserved circRNAs osa_circ_009250
PMCS 0.014327004
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b