Detail information of Os11g0433500_circ_igg.1


General Information
CircRNA Name Os11g0433500_circ_igg.1
ID in PlantcircBase osa_circ_009250
Alias NA
Organism Oryza sativa
Position chr11: 14017473-14018488  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000050036_circ_ig.2 EPlOSAG00000050036_circ_ig.3 Os11g0433500_circ_igg.4
Support reads 1
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTGTTTTCTCTGTAGTTACCAACACCCAGAAGGTCAAATGAGGATTAGAGTTACTACCATA
TGCAGAAAATGGGTGGATGGATCTACCAACACAGAGgttggccttgccgagatgaaggtcgcta
ttgagagaacaggtggccttgttgtcttatctgaaagctttgggcattcagtatttaaggattc
ttttaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGCCTTGCCGAGATGAAGGTCGCTATTGAGAGAACAGGTGGCCTTGTTGTCTTATCTGAAA
GCTTTGGGCATTCAGTATTTAAGGATTCTTTTAAACGTATTTTTGAGGGAGGGGAACAGTCTCT
CGACCTTTCATTCAAGTAAGTTTGATGCTTATTCCCCCTGTTGGGCTGCATTGTGGTATTGAGC
TTTCTGCTTCATGAAGCATAAATGCTGAATTATGACTACAATAGGTTTTCCCTATCATTATCTT
GATAAGAATTGCTCTGTTTATAAACTGGTACTGGGGTATGGAGGTGGTGCCAACATTTTAATTC
TTCGTACAATAAATATATCAGTAGACGAAAATTCCCTGAATATTTGATCTTTCTGTTGACCAAT
TGTGCGAACAAAAGATATATTTTGTACTGTAACAGCTTGGTTTGATGTGCATGGCTTACTGTTG
TATATGTTTCATATACTTTGTTTCATCAGTGACTGATCCTTTGTCTTGTTCATTTTGTTAAAGT
GGCACGCTTGAAATAAACTGTTCGAAGGACATTAAGGTTCAAGGTATTATTGGACCATGCACAT
CTTTGGAAAAGGTAGGGGTATCTGTTCCATCTAGTCAATGCTCTAAGATATTTCAAATTGGAAA
GGCCTATTTTGAGACTTGGTTTAATACATCATGGCATTTGTAGAAAGGAGCTCTATGTGCCGAC
ACAGTTGTTGGTCAAGGAAATACAACAGCATGGAAAATGTGTGGTCTTGACAGGAATACTTCAT
TAACAGTATTTTTTGATGTCTCACCGAGTGAGCGGTCAAGCCAACCAGGACATCAGAATCCCGA
TCTGTATATACAATTTGTAACAAGGTACCTTTCATTTTTATTCTGTTGCCTCCAGTGTAAGAAT
GGCTTGATGTTATAATTGTGCTTTTGTTTTCTCTGTAGTTACCAACACCCAGAAGGTCAAATGA
GGATTAGAGTTACTACCATATGCAGAAAATGGGTGGATGGATCTACCAACACAGAG
Conservation Information
Conserved circRNAs zma_circ_001629
PMCS 0.407200796
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017