Detail information of BGIOSGA016667_circ_g.2


General Information
CircRNA Name BGIOSGA016667_circ_g.2
ID in PlantcircBase osi_circ_014495
Alias Chr04:25147292_25149717(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23097745-23100170  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016667
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016667_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016667-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGTAGTTTTTCTGTAAATATCATGATGCATCCTTTTAGGGTGATTTCGACATTATTGGA
GGTGCTTCACCAATACCAGAGGCTGAAATTGTAAAGggttgacatgtacagtttaggagttata
ttctttgagctttggtatccattttcaacagcaatggaaaggcatcttgttctttctgatctca
aacaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGACATGTACAGTTTAGGAGTTATATTCTTTGAGCTTTGGTATCCATTTTCAACAGCAATG
GAAAGGCATCTTGTTCTTTCTGATCTCAAACAAAAAGGCGATTCTCCATTGTCATGGGCAACAC
AGTTCCCTGGCCAGTCAAACCTATTGAGGCGCCTACTGTCTCCAAGTCCATCTGACCGTCCGTC
TGCTGTTGAACTTCTGCAAAATGATCTACCTCCTCGGATGGAAGATGAGTGGTTAACTGGTAAG
TTTATTAGTTTTCTGGAATATTACTTCATTTCTAGTTGAAAGAGCTATGATCTAATAAATATCG
CATCTACTTCAACTGAATAGATCTGAAGTGTCACTTCAATCTGTTTGTCTAATTTGCACCACTG
CTTTTGTGCATTTTTATGCAGATGTACTTAGAATGATACAGACGCCAGAAGACACATATGTTTA
TGACCGAGTTATATCTACAATATTTGATGAGGAAAGGCTGATTGCCAAAACTCAATGCCAGCTT
GAAGGCAGTAAAAAATCCACTTGTAAAAGTGATAACAGTGAACTTCTAGACTCTATCATTGAGG
TTAGCAAGGAGGTTTTTAAGAGACATTGTGCTAAAAGATTCCAGATATCCCCCTTGCATACACT
GGAAGGGAAATTCACTGAAAACAGGTGTGTTTGGTTCCTACACCTTTCAGCTGATTAGTGTTTG
GTCTAGAATGAAAGAATAAACTAATGACTGTTCAACAATGCTCTGTAATGGAATTTTGTGTTGC
TATCTACAAATTTCTAGGGGAAAGACAGTGAAGATCTTAACTCAAGGAGGAGAGATGCTAGAAC
TTTGCTATGAGTTGCGGACACCGTTTGTCATGTCAGTTGCTGCTAACCAGGTCTGCCACATGTT
TTTATCCTTGCTTCTTCTCCTCTTTTTATGAGTATAATAGCTCCATTCTGCTTGTGTAAATGTT
CTTCCTTCGATGTTCTGTTTCACTATTGTGTTATGTTATGCTCTATTTTTCCCTTAATCAATTT
ATTGCATTTTTATGTTAGAATTTCAATGGTTACTCTCATTGAGAAGAGGATGGCACTCGAGATG
GGGCAATTTTCTGGTTTTCTTCATTCACAAAACACAAAAGCCATACCTACCCGAGGGAGGTTGG
ATGCATATATATAGCCATAGCTGGCTGCTAGCCTATTGCTGCACCCTCCTAGTCTAAAATTTGA
AATTTGAATGAGATGCTGTCCTAGAGGGCATCCAAACTGAATAAAGCATAAAGGAGGCATAAAG
GAGATGCTAACTGCTGCTGTCCTACTAACCGCAGCTGTCCTAGCAACTGAAAAATATGCTAAAG
GGTAGATGCTGTCCTGAAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAATCACGACCAAGGA
CCACAAAGACTTATCCAACATTTTATTAAACATAGTTATTTAGTTGGAGATATTCCCCATTGTC
ACTAAAATTTTCTGTATCTACTTGACACGGTACCTGTGCTTGCATCAGATGTCGAATCAACAAA
TCACAACTTGTAAACTTCAAAGATAGAAATAAAATAACTGAACCCTAGGTCTCAATTATTGCAA
AGATAACTCACATATGATTAAACAGCCACATACATATACACATAACTGGGAAGTGCAATCATTT
ACAAAAGGCACTATAGTAAACACATATATGTATTTATAGATTCCTCCACATAAGATTTGAGATG
GCAAAACCTACCAAGCTAGCACTAACCAGTTCACCACCATTATGAAGTAGATAACATTTTCAGT
GTGGTGCTTCCGTGCTTATTTGCATTCAGGTGTTGACTGTTGTATGTGCTAGATAAAAGCTAAT
GAAGATTCAATGTTCAATTTGGGTACATTACCATTTTTAATTATTGGTTCCAAATGATAATGCA
GTCATGTGCAAGTTTTACATATGCTACATATGCCTTTTAAGTTGTTCGGTACTCCACTGTATCC
CAGGGATATTCACTGAATTTGCCAATTTGCCATTTCATGAGCTTTTTTTTGGGCGTTCTCTGAA
AACATCTGTGTATTTCCCGCTTCTGCCTTTATTTGCGTGCTTGAAAAAGGATGGCGCTAAGAAC
AATTATGATGAGCAACTACTTTACACAACTCATTTACAGATATTATCCTTTAAGCGTTATGAAG
TATCATGGGTTCATCGAAGAGCAGTTGGCCATTCAATTCCTTATCGCTTTCTTCAGGTAACTGT
TTTATTTGCATTGAATATTCATCAACTGTCAAACAAAATGTGAGTTTGCATTATTCGTTTTCTA
TTGTTTATCTTCTTACGGCGCCATTTCAGTAGTTTTTCTGTAAATATCATGATGCATCCTTTTA
GGGTGATTTCGACATTATTGGAGGTGCTTCACCAATACCAGAGGCTGAAATTGTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021