Detail information of BGIOSGA016667_circ_g.3


General Information
CircRNA Name BGIOSGA016667_circ_g.3
ID in PlantcircBase osi_circ_014496
Alias Chr04:25147904_25148267(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23098357-23098720  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA016667
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016667_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA016667-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAGGTCTGCCACATGTTTTTATCCTTGCTTCTTCTCCTCTTTTTATGAGTATAATAGCTCC
ATTCTGCTTGTGTAAATGTTCTTCCTTCGATGTTCTgattccagatatcccccttgcatacact
ggaagggaaattcactgaaaacaggtgtgtttggttcctacacctttcagctgattagtgtttg
gtctagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTCCAGATATCCCCCTTGCATACACTGGAAGGGAAATTCACTGAAAACAGGTGTGTTTGGTT
CCTACACCTTTCAGCTGATTAGTGTTTGGTCTAGAATGAAAGAATAAACTAATGACTGTTCAAC
AATGCTCTGTAATGGAATTTTGTGTTGCTATCTACAAATTTCTAGGGGAAAGACAGTGAAGATC
TTAACTCAAGGAGGAGAGATGCTAGAACTTTGCTATGAGTTGCGGACACCGTTTGTCATGTCAG
TTGCTGCTAACCAGGTCTGCCACATGTTTTTATCCTTGCTTCTTCTCCTCTTTTTATGAGTATA
ATAGCTCCATTCTGCTTGTGTAAATGTTCTTCCTTCGATGTTCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021