Detail information of Os09g0482300_circ_g.2


General Information
CircRNA Name Os09g0482300_circ_g.2
ID in PlantcircBase osa_circ_039612
Alias NA
Organism Oryza sativa
Position chr9: 18523152-18523355  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os09g0482200
Parent gene annotation Peptidase A1 domain containing protein. (Os09t0482200-01)
Parent gene strand +
Alternative splicing Os09g0482100_circ_g.2 Os09g0482100_circ_g.3 Os09g0482100_circ_ag.1 Os09g0482100_circ_ag.2 Os09g0482100_circ_g.3 Os09g0482100_circ_ag.4 Os09g0482100_circ_ag.5 Os09g0482100_circ_g.6 Os09g0482100_circ_ag.7 Os09g0482100_circ_ag.8 Os09g0482200_circ_g.1 Os09g0482300_circ_ag.1 Os09g0482300_circ_g.1 Os09g0482400_circ_ag.1 Os09g0482500_circ_g.1 Os09g0482600_circ_g.1 Os09g0482600_circ_g.2 Os09g0482600_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CC-CT
Number of exons covered Os09t0482300-01:1
Os09t0482200-01:1
Os09t0482300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCCCGGATTCACCTACTGCCTACCGTCGTCGTCGAGCGGCAGGGGCTACCTGTCCCTCGGCG
GCGCCCCGCCGGCGAACGCGCAGTTCACGGCGCTGGtcgggtgcggcgaccagaacgccgggct
gttcggccaggtcgacgggctgttcggcctcggcagggagaaggtgtcgctgccgtcgcagggc
gcgccgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 204
Transcript exons: 18523152-18523355
TCGGGTGCGGCGACCAGAACGCCGGGCTGTTCGGCCAGGTCGACGGGCTGTTCGGCCTCGGCAG
GGAGAAGGTGTCGCTGCCGTCGCAGGGCGCGCCGAGCTACGGCCCCGGATTCACCTACTGCCTA
CCGTCGTCGTCGAGCGGCAGGGGCTACCTGTCCCTCGGCGGCGCCCCGCCGGCGAACGCGCAGT
TCACGGCGCTGG

Genomic sequence TCGGGTGCGGCGACCAGAACGCCGGGCTGTTCGGCCAGGTCGACGGGCTGTTCGGCCTCGGCAG
GGAGAAGGTGTCGCTGCCGTCGCAGGGCGCGCCGAGCTACGGCCCCGGATTCACCTACTGCCTA
CCGTCGTCGTCGAGCGGCAGGGGCTACCTGTCCCTCGGCGGCGCCCCGCCGGCGAACGCGCAGT
TCACGGCGCTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.168867075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016