Detail information of Os09g0482100_circ_g.6


General Information
CircRNA Name Os09g0482100_circ_g.6
ID in PlantcircBase osa_circ_039606
Alias NA
Organism Oryza sativa
Position chr9: 18517953-18518065  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os09g0482100
Parent gene annotation Similar to Heat shock protein 82. (Os09t0482100-01)
Parent gene strand -
Alternative splicing Os09g0482100_circ_g.2 Os09g0482100_circ_g.3 Os09g0482100_circ_ag.1 Os09g0482100_circ_ag.2 Os09g0482100_circ_g.3 Os09g0482100_circ_ag.4 Os09g0482100_circ_ag.5 Os09g0482100_circ_ag.7 Os09g0482100_circ_ag.8 Os09g0482200_circ_g.1 Os09g0482300_circ_ag.1 Os09g0482300_circ_g.1 Os09g0482300_circ_g.2 Os09g0482400_circ_ag.1 Os09g0482500_circ_g.1 Os09g0482600_circ_g.1 Os09g0482600_circ_g.2 Os09g0482600_circ_g.3
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGATTTCGATTCCTCGACGAGAGGGGATTAATTTCGGGGGCGGCGCAAACTTACtgccgtca
cgctcacagatcgacgcgtacaacaacagcaaagagcacataagcaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCCGTCACGCTCACAGATCGACGCGTACAACAACAGCAAAGAGCACATAAGCAAGCACCGATT
TCGATTCCTCGACGAGAGGGGATTAATTTCGGGGGCGGCGCAAACTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.483333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017