Plant Circular RNA Database

Detail information of Os08g0451700_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os08g0451700_circ_g.6
					
						ID in PlantcircBase
						osa_circ_037272
					
						Alias
						Os_ciR3189
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 22085964-22092763  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os08g0451700						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os08t0451700-01);Conserved hypo
thetical protein. (Os08t0451700-02);Conserved hypothetical prote
in. (Os08t0451700-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0451400_circ_ag.1 Os08g0451400_circ_ag.2 Os08g0451400_circ_ag.3 Os08g0451400_circ_ag.4 Os08g0451400_circ_g.1 Os08g0451500_circ_ag.1 Os08g0451500_circ_ag.2 Os08g0451500_circ_ag.3 Os08g0451500_circ_ag.4 Os08g0451500_circ_ag.5 Os08g0451500_circ_ag.6 Os08g0451700_circ_g.1 Os08g0451700_circ_g.2 Os08g0451700_circ_g.3 Os08g0451700_circ_g.4 Os08g0451700_circ_g.5 						
					
						Support reads
						4/3
					
						Tissues
						root/shoot, root, pistil
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0451700-01:12
Os08t0451700-02:12
Os08t0451700-03:12

General Information
CircRNA Name	Os08g0451700_circ_g.6
ID in PlantcircBase	osa_circ_037272
Alias	Os_ciR3189
Organism	Oryza sativa
Position	chr8: 22085964-22092763 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene	Os08g0451700
Parent gene annotation	Conserved hypothetical protein. (Os08t0451700-01);Conserved hypo thetical protein. (Os08t0451700-02);Conserved hypothetical prote in. (Os08t0451700-03)
Parent gene strand	-
Alternative splicing	Os08g0451400_circ_ag.1 Os08g0451400_circ_ag.2 Os08g0451400_circ_ag.3 Os08g0451400_circ_ag.4 Os08g0451400_circ_g.1 Os08g0451500_circ_ag.1 Os08g0451500_circ_ag.2 Os08g0451500_circ_ag.3 Os08g0451500_circ_ag.4 Os08g0451500_circ_ag.5 Os08g0451500_circ_ag.6 Os08g0451700_circ_g.1 Os08g0451700_circ_g.2 Os08g0451700_circ_g.3 Os08g0451700_circ_g.4 Os08g0451700_circ_g.5
Support reads	4/3
Tissues	root/shoot, root, pistil
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0451700-01:12 Os08t0451700-02:12 Os08t0451700-03:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGCTGCTTGCCTACCTTACCGCACAGAACTGCAAGCATCGTGCACTTCACCCTTGAGCCGCTCT
TGAAATGAGACATGGTTGAACTTGAACGCTGCAAGGcgctcgagccagtggagatcgaactgcg
caaggaagcagggatctccccaattcctcacattgctacagctgctgcggatgctaatgctgcc
gccgcagc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1823
Transcript exons: 22085964-22086078,22086398-22086695,22086781-22087018,22
087149-22087322,22087398-22087533,22088063-22088094,2208
8804-22088860,22088954-22089206,22089298-22089386,220898
31-22089884,22091257-22091448,22092579-22092763
CGCTCGAGCCAGTGGAGATCGAACTGCGCAAGGAAGCAGGGATCTCCCCAATTCCTCACATTGC
TACAGCTGCTGCGGATGCTAATGCTGCCGCCGCAGCGGATCACATAGCATCTATGGTCGGAAAA
GGTGGACTAGTGAGTGAACTAAATATCTATGGATCAGATACATCAGCCTCGCCCCAGACAAGTG
TACCAATTTCTTCCTCATTCTCAAGCTGCTGACCCTGGAGGTACATCAAGTTGGGCTGCACAGC
CTGTTTTGCTTTCCGAAATTTGGATTCGCTCAACATAGAGCCTCGCCCTTGCGATGCTTGTTGA
TGTGCAAGTGAGTTGTGCATTCTCTCAACATTCAGCACTGACAACACCTTTGCACAACTACAAA
TTGCCGTTGCCCTTGTATCCTTCACCTAGCTGGTTTTGACACAAAATTTCTCTTCACTCTGTCC
TTCGCAAGGGATGCAGACCATCTTGGCAGATGGTGATATAGACCATTTCCAATAGCTTCATCTT
CATCTTGGTTTGTGCAAAAGAAAAGAAGCCGATCCACATCTTCTTTATCGAACGAAGAAACTGG
AGTATCATTTACAGAAGCAATTCCAAGTGGAACCAGGCTTTTGTAAGACGTTTCTTGAGCAAGA
TATTTCAAAACCTGTGCTGCCCACTTAGGTAAGGTCATCAACACTTCAAAAGTAGAAGCTCCAG
AAGCCACGGACATTGAAGTCAAAGGCTCGGCTGAAGATGGTCCATCATCCTCGCTAACCGAGAC
AACACGAACTAACCGGCGGCTCTCAATAAGTTCTTTCTTAATATGCTTCTCCAAAAGCTCGTCA
TCAAAACAGGTTTGTGGACTGCCAGAAAGAAGCAGTGACACGTGTGAAGAACTGGATGTAGTGA
TATCACAACATATTGTAACCACCCCGTCTAACAGAGCTGAATCAACATGAAGAGGAGGAGCAGC
GCTGACTCTATCCTGGAGTTTGCACCACCGAAATTCAATATTGAGAAGAGCATTCAAACCATCC
TCTAGTGAGTTCAATATAGATGAATCAGGGGTGCAATGTGCTCCACAGATAAGAAGCTTTAAGT
GCACATCTTCATCGTATATCTTTATGTCTGGAAAGTATTCAGAGGTATCTTCTTCCTCAGCCAT
TTTGTTTCCAGGAGGGGTGATATATATCCTTGGAGCATCCCCAAGAAGATGAGGCCCAAGCATA
AGACGTTGCACGTCATTATTTCTTACACAGTATTGTTCAAAAGAAGCATATGCAAGCTGAAATG
CATCCCATGCATGGCTGCAGGAGCTCCGAACAACTGACAATAAGGAATGGCGAAAATGAGATGC
CGCATAGGATGATAATGAATATCTCCAATACATTATATATGAAATCCCCTTCGATTGAAGAGAT
TGAGCAATCTTTTCTCCACTTGGAACTTCCAAATAAACTATGGTAGGAAAAGGCGAACAAATGA
GTGAACTAAATGTCTGTGGATCAGAAACATCAGCATCGCCCCAAACAAGTGCGCCGATTTCTTC
CTCATTGTCAAGCAGCTGTCCCTGGAGGTATATGAAGCGGGGCTGCAAAGCCCGTTGTGCCTCC
AGAAATTGATCAACCGTAGGATTGATCAGCGTGTGCACATCCAACCTCCCGGACGAGATCAACT
CCAGGAATGGGAATGACGGCCGCGGCCGCTGGGACTCGGGCACTGGACCAGGTGGCGTCCGCTG
CTTGCCTACCTTACCGCACAGAACTGCAAGCATCGTGCACTTCACCCTTGAGCCGCTCTTGAAA
TGAGACATGGTTGAACTTGAACGCTGCAAGG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CGCTGCTTGCCTACCTTACCGCACAGAACTGCAAGCATCGTGCACTTCACCCTTGAGCCGCTCT TGAAATGAGACATGGTTGAACTTGAACGCTGCAAGGcgctcgagccagtggagatcgaactgcg caaggaagcagggatctccccaattcctcacattgctacagctgctgcggatgctaatgctgcc gccgcagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1823 Transcript exons: 22085964-22086078,22086398-22086695,22086781-22087018,22 087149-22087322,22087398-22087533,22088063-22088094,2208 8804-22088860,22088954-22089206,22089298-22089386,220898 31-22089884,22091257-22091448,22092579-22092763 CGCTCGAGCCAGTGGAGATCGAACTGCGCAAGGAAGCAGGGATCTCCCCAATTCCTCACATTGC TACAGCTGCTGCGGATGCTAATGCTGCCGCCGCAGCGGATCACATAGCATCTATGGTCGGAAAA GGTGGACTAGTGAGTGAACTAAATATCTATGGATCAGATACATCAGCCTCGCCCCAGACAAGTG TACCAATTTCTTCCTCATTCTCAAGCTGCTGACCCTGGAGGTACATCAAGTTGGGCTGCACAGC CTGTTTTGCTTTCCGAAATTTGGATTCGCTCAACATAGAGCCTCGCCCTTGCGATGCTTGTTGA TGTGCAAGTGAGTTGTGCATTCTCTCAACATTCAGCACTGACAACACCTTTGCACAACTACAAA TTGCCGTTGCCCTTGTATCCTTCACCTAGCTGGTTTTGACACAAAATTTCTCTTCACTCTGTCC TTCGCAAGGGATGCAGACCATCTTGGCAGATGGTGATATAGACCATTTCCAATAGCTTCATCTT CATCTTGGTTTGTGCAAAAGAAAAGAAGCCGATCCACATCTTCTTTATCGAACGAAGAAACTGG AGTATCATTTACAGAAGCAATTCCAAGTGGAACCAGGCTTTTGTAAGACGTTTCTTGAGCAAGA TATTTCAAAACCTGTGCTGCCCACTTAGGTAAGGTCATCAACACTTCAAAAGTAGAAGCTCCAG AAGCCACGGACATTGAAGTCAAAGGCTCGGCTGAAGATGGTCCATCATCCTCGCTAACCGAGAC AACACGAACTAACCGGCGGCTCTCAATAAGTTCTTTCTTAATATGCTTCTCCAAAAGCTCGTCA TCAAAACAGGTTTGTGGACTGCCAGAAAGAAGCAGTGACACGTGTGAAGAACTGGATGTAGTGA TATCACAACATATTGTAACCACCCCGTCTAACAGAGCTGAATCAACATGAAGAGGAGGAGCAGC GCTGACTCTATCCTGGAGTTTGCACCACCGAAATTCAATATTGAGAAGAGCATTCAAACCATCC TCTAGTGAGTTCAATATAGATGAATCAGGGGTGCAATGTGCTCCACAGATAAGAAGCTTTAAGT GCACATCTTCATCGTATATCTTTATGTCTGGAAAGTATTCAGAGGTATCTTCTTCCTCAGCCAT TTTGTTTCCAGGAGGGGTGATATATATCCTTGGAGCATCCCCAAGAAGATGAGGCCCAAGCATA AGACGTTGCACGTCATTATTTCTTACACAGTATTGTTCAAAAGAAGCATATGCAAGCTGAAATG CATCCCATGCATGGCTGCAGGAGCTCCGAACAACTGACAATAAGGAATGGCGAAAATGAGATGC CGCATAGGATGATAATGAATATCTCCAATACATTATATATGAAATCCCCTTCGATTGAAGAGAT TGAGCAATCTTTTCTCCACTTGGAACTTCCAAATAAACTATGGTAGGAAAAGGCGAACAAATGA GTGAACTAAATGTCTGTGGATCAGAAACATCAGCATCGCCCCAAACAAGTGCGCCGATTTCTTC CTCATTGTCAAGCAGCTGTCCCTGGAGGTATATGAAGCGGGGCTGCAAAGCCCGTTGTGCCTCC AGAAATTGATCAACCGTAGGATTGATCAGCGTGTGCACATCCAACCTCCCGGACGAGATCAACT CCAGGAATGGGAATGACGGCCGCGGCCGCTGGGACTCGGGCACTGGACCAGGTGGCGTCCGCTG CTTGCCTACCTTACCGCACAGAACTGCAAGCATCGTGCACTTCACCCTTGAGCCGCTCTTGAAA TGAGACATGGTTGAACTTGAACGCTGCAAGG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.439605137

Conservation Information
Conserved circRNAs	NA
PMCS	0.439605137

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22092740-22086503(+)
						
						Potential amino acid sequence
						
							MVELERCKALEPVEIELRKEAGISPIPHIATAAADANAAAAADHIASMVGKGGLVSELNIYGSD
TSASPQTSVPISSSFSSC*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22092740-22086503(+)
Potential amino acid sequence	MVELERCKALEPVEIELRKEAGISPIPHIATAAADANAAAAADHIASMVGKGGLVSELNIYGSD TSASPQTSVPISSSFSSC*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0451700_circ_g.6

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