Plant Circular RNA Database

Detail information of Os11g0431700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os11g0431700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_009242
					
						Alias
						Os_ciR7027
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 13893712-13895428  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os11g0431700						
					
						Parent gene annotation
						
							Similar to Serine carboxypeptidase. (Os11t0431700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0431700_circ_g.1 Os11g0431700_circ_g.3 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0431700-01:4

General Information
CircRNA Name	Os11g0431700_circ_g.2
ID in PlantcircBase	osa_circ_009242
Alias	Os_ciR7027
Organism	Oryza sativa
Position	chr11: 13893712-13895428 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os11g0431700
Parent gene annotation	Similar to Serine carboxypeptidase. (Os11t0431700-01)
Parent gene strand	-
Alternative splicing	Os11g0431700_circ_g.1 Os11g0431700_circ_g.3
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0431700-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGACACATAAATGCAATTTGG
GTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAGccagcagactggccatcgatatgccagg
ctctccagtcatccacaattgggtagttgagtgatctcacccaggcttgtgtcccgaggaatgg
cacaacag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 439
Transcript exons: 13893712-13893825,13894921-13895020,13895115-13895186,13
895276-13895428
CCAGCAGACTGGCCATCGATATGCCAGGCTCTCCAGTCATCCACAATTGGGTAGTTGAGTGATC
TCACCCAGGCTTGTGTCCCGAGGAATGGCACAACAGCATCGTGGTCACCACTTTTAGTGTAACA
TTTCGATGATACTTTATGCTGCTCCTGATGTCGATGTTGTATGGTAGATCATGTTCGTGGCACC
TAACCCATTCATTTATGGTGCCCTTCTTGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGC
CCAAAAATATGACAAATAGTTGGCATAGACACCACATTTTATTGAAGGTTGAGGAGGTGGATGT
TTTAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGG
ACACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAG
						
					

						Genomic sequence
						
							CCAGCAGACTGGCCATCGATATGCCAGGCTCTCCAGTCATCCACAATTGGGTAGTTGAGTGATC
TCACCCAGGCTTGTGTCCCGAGGAATGGCACAACAGCATCGTGGTCACCACTGCACATAAATTT
GATGAAACAGTAGTTTACAATACTGGGTATATCTTAAGAAGGTAAAAATGTGTCTGTAGCTCAA
CACAGTGAATCAAAGTATTACTTATCATCAAGAGATTTTTGCTAGATGCACACATTCGTTGTTA
GTTGGGTTAGTAGTTTCCATCCAACATGTTGTTCTGTCATCCAACATTACTTTCACCAATGACC
ACTAGTTTTTCCTATTAAAAGATTTTAAAGTCGAAATGTTAGTAAGAGTGGACCTGCAAATTTG
ATGTTTTTTTCCCTGAATAGCTTCATTCAAAAGGATTTTTCACTAATTCCTTTTTGAAATGTCA
TGCTGAAATATATATAAAAAATACAATTTCTTTCAATTGAGGTTAATGTTTGTGTGTTTATGTA
ACACATCCAGAAATTCCTTCAGCTGTCCATTTTTTTATAAATAAAGAAAATATCTGCCCTTGGT
ACAGATAGTAGTAATCTGCTTCATAATCCAACGTGTTGATGGGATCAATTTGTAAAATCAATTC
CTGGTAATTGTTTCTAATATTTTATTCAACAAAAGGAGAATTTTGCATAAATAAATTGGTTTGT
GTGCGTCTGAGTTCTGCACAACCAAAGTCAATATTGAGGTGGGCTCTAATTTATTTATTCTAAC
AGAAGGTTTGGTTTATCCTCGATTTATCCCCGTGTATGATTTATTTATGTTTTAAGTACAATTC
TCACCAAGTGGTTACAAGAACTGATATGAACAACCAAGACTATAATATGAACAGAACACGTTTA
AGTATAGGTTTAATTTAGGAACAATCTTTTATTCAAAACATAGTTACAATGCTATCTCTAGCTG
GTAATGACGAAATAATAAGACTATTTATATTTTCCTCAAAAAATAAGAATATTTATCAAAAATA
TGAAATACTCCCTTTTCCTGTGATAGCCATGGCATGTACTTGTCTAAGGTATATATATATATAT
TTGTCATAGCCATCTCATCTAGTTTGGATATTCTATTGAAATGTTCTAAATAATAGCTTGTACA
GGTACTACTGAGAACTTGCCAATAACATTTATTACCAATATACCAAAGCACGGTAACCTTTTAG
TGTAACATTTCGATGATACTTTATGCTGCTCCTGATGTCGATGTTGTATGGTAGATCATGTTCG
TGGCACCTAACCCATTCATTTATGGTGCCCTGGATATTTGGCATTTAGATAATTTGAAAAATGT
GCTCGTATGGCAAATGCAAAGGAGTGATTCCTAGAAATGAAAAGGTGCCCCGAAATTACCTTCT
TGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGCCCAAAAATATGACAAATAGTTGGCATA
GACCTGTGGATGCGAAAATTCACCTAGATTCAGATGAACTTAAATATATATAGAAATATGTACG
TGATATTACGTGTAGTGGAGTTCCTTACACCACATTTTATTGAAGGTTGAGGAGGTGGATGTTT
TAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGAC
ACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAG
						
					

			
		

Sequences
Splice junction sequence	CCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGACACATAAATGCAATTTGG GTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAGccagcagactggccatcgatatgccagg ctctccagtcatccacaattgggtagttgagtgatctcacccaggcttgtgtcccgaggaatgg cacaacag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 439 Transcript exons: 13893712-13893825,13894921-13895020,13895115-13895186,13 895276-13895428 CCAGCAGACTGGCCATCGATATGCCAGGCTCTCCAGTCATCCACAATTGGGTAGTTGAGTGATC TCACCCAGGCTTGTGTCCCGAGGAATGGCACAACAGCATCGTGGTCACCACTTTTAGTGTAACA TTTCGATGATACTTTATGCTGCTCCTGATGTCGATGTTGTATGGTAGATCATGTTCGTGGCACC TAACCCATTCATTTATGGTGCCCTTCTTGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGC CCAAAAATATGACAAATAGTTGGCATAGACACCACATTTTATTGAAGGTTGAGGAGGTGGATGT TTTAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGG ACACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAG
Genomic sequence	CCAGCAGACTGGCCATCGATATGCCAGGCTCTCCAGTCATCCACAATTGGGTAGTTGAGTGATC TCACCCAGGCTTGTGTCCCGAGGAATGGCACAACAGCATCGTGGTCACCACTGCACATAAATTT GATGAAACAGTAGTTTACAATACTGGGTATATCTTAAGAAGGTAAAAATGTGTCTGTAGCTCAA CACAGTGAATCAAAGTATTACTTATCATCAAGAGATTTTTGCTAGATGCACACATTCGTTGTTA GTTGGGTTAGTAGTTTCCATCCAACATGTTGTTCTGTCATCCAACATTACTTTCACCAATGACC ACTAGTTTTTCCTATTAAAAGATTTTAAAGTCGAAATGTTAGTAAGAGTGGACCTGCAAATTTG ATGTTTTTTTCCCTGAATAGCTTCATTCAAAAGGATTTTTCACTAATTCCTTTTTGAAATGTCA TGCTGAAATATATATAAAAAATACAATTTCTTTCAATTGAGGTTAATGTTTGTGTGTTTATGTA ACACATCCAGAAATTCCTTCAGCTGTCCATTTTTTTATAAATAAAGAAAATATCTGCCCTTGGT ACAGATAGTAGTAATCTGCTTCATAATCCAACGTGTTGATGGGATCAATTTGTAAAATCAATTC CTGGTAATTGTTTCTAATATTTTATTCAACAAAAGGAGAATTTTGCATAAATAAATTGGTTTGT GTGCGTCTGAGTTCTGCACAACCAAAGTCAATATTGAGGTGGGCTCTAATTTATTTATTCTAAC AGAAGGTTTGGTTTATCCTCGATTTATCCCCGTGTATGATTTATTTATGTTTTAAGTACAATTC TCACCAAGTGGTTACAAGAACTGATATGAACAACCAAGACTATAATATGAACAGAACACGTTTA AGTATAGGTTTAATTTAGGAACAATCTTTTATTCAAAACATAGTTACAATGCTATCTCTAGCTG GTAATGACGAAATAATAAGACTATTTATATTTTCCTCAAAAAATAAGAATATTTATCAAAAATA TGAAATACTCCCTTTTCCTGTGATAGCCATGGCATGTACTTGTCTAAGGTATATATATATATAT TTGTCATAGCCATCTCATCTAGTTTGGATATTCTATTGAAATGTTCTAAATAATAGCTTGTACA GGTACTACTGAGAACTTGCCAATAACATTTATTACCAATATACCAAAGCACGGTAACCTTTTAG TGTAACATTTCGATGATACTTTATGCTGCTCCTGATGTCGATGTTGTATGGTAGATCATGTTCG TGGCACCTAACCCATTCATTTATGGTGCCCTGGATATTTGGCATTTAGATAATTTGAAAAATGT GCTCGTATGGCAAATGCAAAGGAGTGATTCCTAGAAATGAAAAGGTGCCCCGAAATTACCTTCT TGATTCCTAGAGTTCTTCGTGTAAAGTTGTTGTTTGCCCAAAAATATGACAAATAGTTGGCATA GACCTGTGGATGCGAAAATTCACCTAGATTCAGATGAACTTAAATATATATAGAAATATGTACG TGATATTACGTGTAGTGGAGTTCCTTACACCACATTTTATTGAAGGTTGAGGAGGTGGATGTTT TAGTCCTCCATGCTCCCCCTTCAAGATCTTTCTGTCGATTGTCTCATGATTTGGCTTGGGGGAC ACATAAATGCAATTTGGGTTCAAAATTTGGGCCCTCGAACCTTCGTGTAGTAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008980 						
					
						PMCS
						0.201640293

Conservation Information
Conserved circRNAs	osi_circ_008980
PMCS	0.201640293

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13895166-13893770(+)
13895383-13893766(+)
13893753-13895357(-)
						
						Potential amino acid sequence
						
							MTNSWHRHHILLKVEEVDVLVLHAPPSRSFCRLSHDLAWGTHKCNLGSKFGPSNLRVVASRLAI
DMPGSPVIHNWVVE*(+)
MQFGFKIWALEPSCSSQQTGHRYARLSSHPQLGS*(+)
MTGEPGISMASLLATTRRFEGPNFEPKLHLCVPQAKS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13895166-13893770(+) 13895383-13893766(+) 13893753-13895357(-)
Potential amino acid sequence	MTNSWHRHHILLKVEEVDVLVLHAPPSRSFCRLSHDLAWGTHKCNLGSKFGPSNLRVVASRLAI DMPGSPVIHNWVVE(+) MQFGFKIWALEPSCSSQQTGHRYARLSSHPQLGS(+) MTGEPGISMASLLATTRRFEGPNFEPKLHLCVPQAKS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os11g0431700_circ_g.2

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