Detail information of BGIOSGA025615_circ_g.3


General Information
CircRNA Name BGIOSGA025615_circ_g.3
ID in PlantcircBase osi_circ_017018
Alias Chr07:15200174_15204930(MH63RS2), Chr07:15200174_15204930(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 13725062-13729818  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA025615
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA025615_circ_g.1 BGIOSGA025615_circ_g.2 BGIOSGA025615_circ_g.4 BGIOSGA025615_circ_g.5 BGIOSGA025615_circ_g.6 BGIOSGA025615_circ_g.7 BGIOSGA025615_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA025615-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGAGCAAGCTTCGAAGGGAGAAGTGAGTAATGTCGATTACATGTCAATTTATGCATCCGATC
TTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAGgcattatcagggaagatcattcaaaatg
cattcttggcacaacatcgcccacaggctagacacagcacaagatatcccagtgacttttgtgc
cctcgata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCACAGGCTAGACACA
GCACAAGATATCCCAGTGACTTTTGTGCCCTCGATACCCGCAGCGTGCATTCTTTCCAGGAACA
TAGACTAAGACTGGCTGGTACTTCAGCCAAGTGGTTAAATACAATATCAACAGCATGGATTAGC
TCCAGCAAACAAGCATATATTAGCTGCAATGGTGTGTTCTAGGCTCTCATTGATCAGGTTGCTT
AATGCTCACTAGTGTTACGTTAGGATTTTTTTTTCACAAACTCATTTTGGTGATTTTATGCCAG
ATTATAGAATCAATACTTTTTTTTTGAATGTGTGTATCAACAAATCTGAAAAGTCACTTACACT
ACCTTCATTGCAGCTGCTCAAGGTAGCAGCGTTGTCTCATCCTCTGCGAAAGTTGACTTTTTAA
AGCTCCAGAATGGCAGGTATAACAATGTTCACTCTTTGTATGATCTACACCCTCTAGTCTAACT
ATGGTATTGCTCTTTCTAAGGTCAAATTGTATGGCTATTTTTCTCTTTAAGCCAATGGTAATGA
GCATATGGTTTCCAACTATGATGTTGTTTGAAAGCACCGTGGTTCTTATGTTAACAGTCAATTC
CATGTCTAGTGCTTCTGTGTTCCTTTTCATTTAACCATCTAATTGCTTTGGTGTTTTCACATGC
ATCCCATGTTTTTGCTTTATGTGCTGCTCTTAAACATTTCAATTGCTACTGAATTTCAATCTTA
CTTGTGTCAGAGAAAAAACTCTTTGAGATAAAAAAAATATTGTAAGTTGTAACAACATGGCAAG
ACCTATAACTATACATCCTCATTTGAGATTATAATTACAAGAATATTGCTTCTGTAAACCGCAG
AATCACATAATTTTGAGCAATGCTGTTGCTTAGTTTTTTCTAGTTCAGCTGCAATTGACAAAAG
GTATCTGGATATCCTGCTGGTGAAATGCATATGACCATTGAATAATTATTGTATGAATACAAGT
TCAACTTTGGCTTTGACCTTTTTTAGAAAGTAATTACATGCGTTTTGGGCTGCGCATTGCACTT
TATGGTAAATCATTCGGTGATCTAATGGATATTGCTAGTCTCAAACAAAAAAATATGGCAAGAG
CTTGCGAGATATTGCTAGTTTCCATCCTATCTTTATCTGCATGGCATGGATTGGTGCATTAAAA
GAACTTTTTCTTCAGCTCTAGGCCATTAGGAGAATTTGTCTTTAGTTATACAGCATAGTAATTC
CAAATTGCTAGCTTGTGTGTTACATGTGGTTCATGTCATCCTGTCTATGGACTAGTTTCTCTTT
TGACATCACTTGAAGGAGACACCCTGTATCTGTATCTAATTGGGCATATTTTCTCTATATTCCT
ATCTCTTAGCATGATATTTTCCCTGATATAACATCTTCCTCAGACCTCGGACTAAAGGCTAAAA
ATTCATGTTTGATCAACTCTTGATTTATGTCATGGGCATATGCCTATCATAATTTATTTGGAAT
TGTGTGATTATTGTGAACTTATATTGTTCTTCTTGATAGCTGGTATGTTGGAATTAAGTTATCA
CTTTTGCTAAGAAAGGTGAAGAATCAATTGATCATACAGCTTTGGGATGTTCTAGATGGGGGTT
ATAACAATTTTAGTTAAAGCTAAAGAGTTTATTGTTCTGCATCCATGACGTGTTATTAATCAAT
TGGCTTTACTCTCTTCTATTTCTCACAGTGATATCCGTGGTGTTGCTGTTGGTGGGGTCGAAGG
TGAGCCCGTAAATCTCACTGAGCCTGTTACTGAAGCAATAGCTTCTGCATTTGCTGCATGGTTA
TTAAACAAGAAGAAAGAGGATGGATGGAGACGTTTAAGAATTTCTGTTGGACATGATTCTCGAA
TTTCTGCACATAAATTGCAGGTGGCTCCTGTTCTCCGCTCTTATTTTTATTGAATCTTTATTCA
AAATAATGCATTGCATGCTTTAAGGAATTAAGGTAACCCCTTATAATTACTAAAATCCTGTTCC
AACTAGTGATGATTTGGACTATTCTCAGTTTTAACCACTAACCAGTGTTGTTGTTTTTTTTTTT
TGCCCAATTATGTTGCCATGTTGAAATTTGGGATTAACAAACTTTTATTTCATATATGGATCAA
GAAGCATTCTCGCAGAAAGAAAAAGGATGTGAACAACTCTTCTGTTTTGACATCTGCAAGCATT
TCTATGATTGCGGCAGATAGTTGTAATTATATGTATTTTGTCTAAATATAAAGTGGTACGAAAG
ACTTGTATATCCAGATATCTGCTGCTTATTTGCATCTGATGTTGTACTAGCTACAGGTTGTTTT
TTTTTTCTTGAATGCAAATTGACTGAAATCGTTCACTTTATGTAGTGATACTGCTCTATTTCCA
TATATGTTGAGAATTGAACTTGGCTTTTGGAGCATACGTCAGTATATTGTATGTTGTTGGGTAA
GGCTGTTGGAGTTGATGGATGGAGGTCAAAGTTCACACCTTCTGTGTTTGCACTGTGTGAGTTG
ATTGGGAAATGGAATTAGAGCTCCACACGTGGTGTCCAAATAAAAACTACTCATTCAGGAGGGA
ATAGGAAATTGTGCAAAAGATAATTCCTTGAAAAGTTGTACCTTTTGCATGCAAAGTTTCTTCT
ACTACTTACAATCAATTGAATTACCATTTGTACTTTTGTGACAAAAAATATACACACCTAATGA
GTTATTAGAAGGACCTTTGTGCATGCCTAAGTATTTGGATTTGTAGTTCTGGTACATATTAGTC
AAGGATGTGTTCTCTGCTACTTTTTATAATTTTTCAATGATGCTATTTGATTTATATTAGGCAC
TGCATTCTGTTGGTATAAATAAATGAACAGAAATTTTCCAGTCCTGACTTCTGACAAGTCTATA
TGTAGTTTGAGCAATGTGATTTGGTCCTTCAATTTTTCTTTTTGCAAGTATTGCTTATTAAAAG
TGATAATTGTCAGGATGCAGTTACTCTTGGAATTACCACTGCAGGACATGATGTTTTACAATTT
GGGTGAGTTGAATATTTATTTTTCTTACATTTATCAAGATCTTCAATTTTTCCTGTAGCCTTCA
ATGCTTAGAATTTAAGTGTGTAATTGATGAAGTTCTCTTGCTACTGTGATTCTTTTTCACTCAG
AAACTCCACACATCAATTCTTATGTAACTACAAGCCTAGGGAACTAATTTGAACTACATCAAAT
GATTTCCACAATTTCAATCAGTCTTTTCTTCACAACTTTCTTACTTCTCTGCTTAACAAGTAAA
GATCTGCCAAATATTCATTTATGACAATTCATGATGTAGATTGGCTTCAACACCAGCAATGTTC
AACAGTACACTTACAGAAGATGAGATAAATCATTTGCCAGTTGATGGAGCCATAATGATAACAG
GTACTATTCCCAGTTTAATGTGCAACATTAGAAGACAAGCATTTCTTCAGATGAATACACAAGA
GTTTTGAAAAATATACATGGTGTCCAATCTCTTCTCCAAACATATGTAAATTTTATTGATGATT
CTTTGTGACTACATAATTGTTCTCTAATTATTGGAAAATATCTCCTTTATTGGGAATTTCTGTT
CTTGCCACCACATATGTGCACCATCTTAGTATTGCCCATGAAAAGTCATCCTTTCCCATCCTTC
TTCCTCATGGTCATGGGAGCTCCTTTCTATTTTCCTCCTGAAATATATTATCTGAAGCCCCTAC
TATTTTCCTATTCCAGCCCCGCCCATCTTATCCATTCTTCTCTAATAAACTCCTAGGAAACCAC
TATCACCAAGATCTTGTTGCTTGGCACCAAACCCTGCCAATGAAAAGCACAGTAGGGCCAGTGA
AGAGGGTGCACATACTCCACTCCCTTTTGAATCCCCTTCGGCGCAAATAGTAAGAATCACTGCC
ACAGTTCTGATGGCCTAGCAGCCCGGGGAGCAGGGAGCCTGCGTGAGGAGGTACTGCTGAGTGG
ACGGAGCTGGGTAACTTGGGTTCATACTTCATAATCACACACAGGTAGCCAGTGGGGGTGCTTC
TGCTACAACTCCTCTATGTAGATCGATCCTACTCCATTTATTTGTGTAGTTATTTATTGTTGGG
TAGTTTGAGTTTATCTGGCATCCATGCCTAGGCAGACACACTAAGCTATTCCTTGAAGTGGACT
TGGAATTGCTCCTAAGAATCAAGGATGGTGAGGAAGAGGAAAGAAGACGTAGGTGGGAAAAATT
CTTACGAGGGGCAACGTGTAATATCGTAGTAACTTTCAAACATGAAACAGTTTCGATACTGGCA
AAATCGAGACACATTCTGTGGTAGAACCAGTATGGCACACATTTGTAGTCACTAGAACAAAGTT
TTCCCTTTCTTGTTTTACCACATGTGAAATGCCTAATTATGTAGAAACAACTGTTTGATTCTCT
ATTTTTAACCAAACAAACTTCTGCTCCCACTTTTTCACAGCAAGTCATCTTCCATACAACCGGA
ATGGTCTCAAATTTTTTACAAGTGCTGGTGGTTTGAATAAGGCTGATATCAAAGATATCTTGGA
GCGTGCTTCTAGAATATACGAGGACTCTTCTCATGGTAGCACACAAGAATTAGAGCAAGCTTCG
AAGGGAGAAGTGAGTAATGTCGATTACATGTCAATTTATGCATCCGATCTTGTGAAAGCAGTTC
GTAAATCTGCTGGAAACAAAG
Conservation Information
Conserved circRNAs osa_circ_033641
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021